Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0077 ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAACATGGACATTTGGTTTGAGCTTACTTGGATTGGCCCCACTTGCAGAACGTGTCAGTTTTCTGACTGAGCAGATTGCATGCTTCACGGGGCCCACAGTTAGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATATTTGCTTTGCATCAAAATAAAGTTCATGTCTTGAAGTTTTCTCTTTTGGGTTCTATTCTCTCCAATTTACTTCTAGTCCTTGGCACATCCCTTTTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAAAGTGGCCAATGTGAGCTCTGTGGTGTTGCTGTTGGGATTGGTATGCCAAATGCTGCCATTGATGTTCACATTTGCATCACCCAAAATCTCAACAAATTTTTCTTTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCACAGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGAAGAGGATGAAGAAGAAAGGGCAGTGGTTGGATTTTGGAGCTCATTTGGTTGGTTGGTTGGTATGACCATAGTCATAGCTATTTTATCACAATACATTGTGGCAACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGGATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTATTGGATGGTGCATGGGCATCAAAATGGATCTTGATTTTGGTATACTTGAAACAACTTCTCTTGCCTTTACCATCATCTTGACTATCTTCACCTTACAGGATGGAAGTTCACATTACATCAAAGGAATGGTACTTGTCCTATGTTATGTAGCAATTTCTTCCTGTTTTTTCTGTTCATAA 1191 41.73 MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGRTWTFGLSLLGLAPLAERVSFLTEQIACFTGPTVSGLVNATCGNATELIIAIFALHQNKVHVLKFSLLGSILSNLLLVLGTSLFFGGLSNLNKQQTFNPKVANVSSVVLLLGLVCQMLPLMFTFASPKISTNFSLLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQEEEDEEERAVVGFWSSFGWLVGMTIVIAILSQYIVATIEDASKSWGVSVSFISIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIIGWCMGIKMDLDFGILETTSLAFTIILTIFTLQDGSSHYIKGMVLVLCYVAISSCFFCS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 955976 962484 + ClG42_03g0007700.10 Clacu03g0077 244642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0077 396 Gene3D - 243 393 IPR044880 -
Clacu03g0077 396 Gene3D - 98 237 IPR044880 -
Clacu03g0077 396 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 395 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Clacu03g0077 396 NCBIfam calcium/proton exchanger 52 394 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Clacu03g0077 396 FunFam Vacuolar cation/proton exchanger 238 395 - -
Clacu03g0077 396 Pfam Sodium/calcium exchanger protein 251 389 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu03g0077 396 Pfam Sodium/calcium exchanger protein 68 224 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0077 Clacu-Chr3:955976 Clacu10g0399 Clacu-Chr10:5040621 1.60E-85 dispersed
Clacu10g2169 Clacu-Chr10:34830172 Clacu03g0077 Clacu-Chr3:955976 1.10E-118 wgd
Clacu03g0077 Clacu-Chr3:955976 Clacu04g0759 Clacu-Chr4:21896479 2.70E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0077 K07300 - csv:105436053 626.706