Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu03g0086 | ATGGCCAACGACGTCGTTTGCCTTTTCCCCTTCCCCTCTTTCTACCTCATTCTCATTTTCTCCTATTTCATTTGGTTTCATTTCCTCGCCCGTAAGCTCACCGGTCCGCCCGTATGGCCACTCATCGGCAGCCTTCCGGCTCTCATCTCGAACCGGCGGCGACTCCACGACTGGATGGCCGGCAACCTCCGCGCCACAGGCGGCGCCGCCACTTACCAAACCTGCACGGTGGCGCTTCCATTCATAGCTAAAAAACAAGGATTTTACACGGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTCCGAACCCGGTTCGAAAATTACCCGAAAGGACCGGACTGGCAAGCGGCTTTTCACGATTTATTAGGGCAAGGGATTTTCAACAGCGACGGAGAAATTTGGCTGATTCAACGGAAGACGGCGGCGCTTGAATTCACGACGAGGACTCTCCGGCAGGCAATGGACCGGTGGGTGAATCGGACGATACGGACGCGACTGTGGTGTATATTGGAGAAGGCGGCGGAGTACAAAACGGCGGTGGATTTGCAGGATTTGTTGCTCCGATTAACATTTGATAATATTTGTGGGCTGACTTTTGGGAAAGATCCACAAACTTTGTCGCCGGAATTGCCTGCGAATCCGTTTGCTTTGGCATTTGATACCGCCACTGAGGCCACTCTTCAGCGCCTTCTTTACCCTGGTCTTTTATGGAGGTTGGAGAAGCTTCTGGGCATTGGAATGGAAAGAAGGTTGAAGAAGAGTTTGAAAGTAGTAGAAGAATACATAAACGACGCCGTTGCAGCCCGTAAACAATCTCCCTCCGACGACTTATTATCACGCTTCATGAAGAAACGCGACGGCGACCGCTTCTCCGCCGCCGTCCTCCACCGCATCGCATTAAACTTCGTCCTCGCCGGCCGAGACACCTCCTCCGTGGCTCTCACGTGGTTCTTTTGGCTAGTAATGAACCACCCACACGTAGAGGAAAAAATCATCTCCGAAATCTCAACGGTCCTCCGCCAGACACGAGGCGACGATCCACGCCGTTGGATCGAAGAACCGTTGGTATTCGACGAAGCCGACAAATTAGTGTACTTAAAAGCCGCGTTGGCCGAAACGCTGCGTTTATACCCTTCCGTACCGCAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTTGTGCCAGCTGGTTCAACCGTGACGTATTCGATTTATTCGGTCGGGAGGATGAAGAGCATTTGGGGGGAGGATTGTGCGGAGTTTAAACCGGACCGGTGGTTGTCTCCCGCCGGGGACCGGTTCGAGGGGCCAAAGGATGCCTACAAATTTGTGGCGTTTAATGCTGGACCGAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAAATGAAGTCCGTTGCCTCCGCCGTACTCCTCCGGTACCGGCTAGCGCCGGTTCCCGGTCACCGGGTGGAACAGAAAATGTCTCTTACACTTTTTATGAAGAACGGGCTTCGTGTTTATTTGCATCCTCGCCGGCTTGCCTAG | 1545 | 53.14 | MANDVVCLFPFPSFYLILIFSYFIWFHFLARKLTGPPVWPLIGSLPALISNRRRLHDWMAGNLRATGGAATYQTCTVALPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILEKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPANPFALAFDTATEATLQRLLYPGLLWRLEKLLGIGMERRLKKSLKVVEEYINDAVAARKQSPSDDLLSRFMKKRDGDRFSAAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKIISEISTVLRQTRGDDPRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCAEFKPDRWLSPAGDRFEGPKDAYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLA | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1050234 | 1052879 | - | ClG42_03g0008600.10 | Clacu03g0086 | 244651 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu03g0086 | 514 | PRINTS | P450 superfamily signature | 450 | 459 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | P450 superfamily signature | 459 | 470 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | E-class P450 group I signature | 368 | 386 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | E-class P450 group I signature | 449 | 459 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | PRINTS | E-class P450 group I signature | 459 | 482 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 452 | 461 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu03g0086 | 514 | FunFam | Cytochrome P450 | 27 | 514 | - | - | |
| Clacu03g0086 | 514 | Pfam | Cytochrome P450 | 90 | 501 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | Gene3D | Cytochrome P450 | 29 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | SUPERFAMILY | Cytochrome P450 | 24 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g0086 | 514 | CDD | CYP86A | 75 | 504 | - | - | |
| Clacu03g0086 | 514 | PANTHER | CYTOCHROME P450 | 24 | 504 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g0258 | Clacu-Chr1:2527690 | Clacu03g0086 | Clacu-Chr3:1050234 | 1.10E-192 | dispersed | |
| Clacu03g0086 | Clacu-Chr3:1050234 | Clacu09g0450 | Clacu-Chr9:3917298 | 7.10E-123 | dispersed | |
| Clacu03g0086 | Clacu-Chr3:1050234 | Clacu06g0362 | Clacu-Chr6:4338519 | 1.80E-195 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu03g0086 | K15401 | - | csv:101214516 | 993.03 |