Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0117 ATGGGGGAGGAGGAAGTGCCCATTTTGAAAACAGAACATTGGCATGAACTTAAGACGCCAGTAGCTGCTAAGAAGAAGGATGTTTCTATTCCCAATTCCCCAGGGTCAGAAGCAAAACGTTGCAGTTCTGGCTGTGCTTTTTCCAGATTGGAACACAGTAATTTGGAGTCATTAAAACGTTCTAAATCAGCTATGAAGCTTGGTGGATTGATATTATTTTATACCATAGCTATGGCAGTAGAGACTATTGGTGGTTTGAGAGCTAACAGTCTAGCTGTAATGACAGATGCAGCCCACTTGCTTAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGCGTTTCGGGCTGGGAGGCAACACTGCAACACTCATTCGGGTATTACCGTCTTGAAGTTTTAGGTGCCCTTGTGTCTGTTCAGCTCATATGGCTGATTTCTGGGGTCTTAATCTACGAGGCGATCGACCGGATTCTTAGCCAAAAGACTAAGGTGGATGGTTTCCTTATGTTTGCCATTGCAGCTTTTGGATTCACTCTTAACTTGTTTATGGTCATGTGGCTTGGCCATAGCCACCACTCTCATTCATCTCATTGTTGTCATCATCATCATGATCATCACTCTCACTCTCATCAGAATCACTTGGATCATGAACCTGACCATAAGGAGGAGGAGATTTTCACAGCAACCAAACAAGAGGGTGCTTCTTTGGGGTCGAAGGACAATAGTTCAATGTTGAACATAAATCTCCAAGGTGCTTATCTTCATGTCATTACTGATATGATTCAATCTATTGGTGTGATGATTTCTGGAGTCATTCTATGGTTTAAACCCGACTGGATCGTCGTCGATTTAATCTGCACTCTTGTATTTTCTGTTCTTGCTTTAGCTACTACTTTCTCTATGCTTAGACGTATAGCTGGTATATTGATGGAAGGAACACCTAGGGAGATCAATATTGAGAGCCTGGAAAATGAGCTCAAGGACATAAAAGGAGTCCATTATTTGCATGACTTGCACATTTGGTCCATAACGGCCGGAAAAGTCGTGTTGTCGTGCCATGTTGTCGCCGAAGCCGGAGTTTGTTCTAGGGAGCTAATTTTGAAGATTAGAAGCCTTTGTGAAGACAGATACAATATAATTCATACTACCATACAAGTTGAGTAG 1170 42.39 MGEEEVPILKTEHWHELKTPVAAKKKDVSIPNSPGSEAKRCSSGCAFSRLEHSNLESLKRSKSAMKLGGLILFYTIAMAVETIGGLRANSLAVMTDAAHLLSDVAGFSVSLFAVCVSGWEATLQHSFGYYRLEVLGALVSVQLIWLISGVLIYEAIDRILSQKTKVDGFLMFAIAAFGFTLNLFMVMWLGHSHHSHSSHCCHHHHDHHSHSHQNHLDHEPDHKEEEIFTATKQEGASLGSKDNSSMLNINLQGAYLHVITDMIQSIGVMISGVILWFKPDWIVVDLICTLVFSVLALATTFSMLRRIAGILMEGTPREINIESLENELKDIKGVHYLHDLHIWSITAGKVVLSCHVVAEAGVCSRELILKIRSLCEDRYNIIHTTIQVE 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1317261 1318430 - ClG42_03g0011700.10 Clacu03g0117 244682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0117 389 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 25 389 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Clacu03g0117 389 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 313 IPR027469 -
Clacu03g0117 389 Pfam Cation efflux family 71 312 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu03g0117 389 NCBIfam cation diffusion facilitator family transporter 71 389 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu03g0117 389 Gene3D Cation efflux protein transmembrane domain 67 311 IPR027469 -
Clacu03g0117 389 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 318 389 IPR036837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0117 Clacu-Chr3:1317261 Clacu06g0092 Clacu-Chr6:1039104 4.30E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0117 K14689 - csv:116403740 606.29