Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0119 ATGCGTGTCAAAAAGGAAGTCTCTCTCTTGTCGCGCTGCTCCAATCTTATTGGGCCACGTTTCCACCACCTCCCCAAACTAATTCTACGCGTGTCCTCTTCTGATCAACCCACCCCTTCTCAATCAACGGCTCAGATCTTTCCATTCACTACGTCACGCACTTTACTACCTCTTCGATCTGCCCGTCTCTCCCCGGGTAGCTACCCTTGCCGTCGCCGTCGTCGTCGTCGTCGGCATATTTCGGAGATTGAAGTAATCAACTGCGGCTGGGGTAGGGGGCAGGGGAGATTAAAGAACTTAGTAATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCAAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTATCTCGGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGTCGCAACGGAAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG 1578 55.45 MRVKKEVSLLSRCSNLIGPRFHHLPKLILRVSSSDQPTPSQSTAQIFPFTTSRTLLPLRSARLSPGSYPCRRRRRRRRHISEIEVINCGWGRGQGRLKNLVMAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSRESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1341008 1343056 + ClG42_03g0011900.10 Clacu03g0119 244684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0119 525 Coils Coil 261 297 - -
Clacu03g0119 525 SUPERFAMILY PP2C-like 204 520 IPR036457 -
Clacu03g0119 525 ProSiteProfiles PPM-type phosphatase domain profile. 211 519 IPR001932 -
Clacu03g0119 525 Gene3D - 201 523 IPR036457 -
Clacu03g0119 525 CDD PP2Cc 211 519 IPR001932 -
Clacu03g0119 525 Coils Coil 153 173 - -
Clacu03g0119 525 FunFam Protein phosphatase 2C 50 209 523 - -
Clacu03g0119 525 ProSitePatterns PPM-type phosphatase domain signature. 247 255 IPR000222 GO:0043169(InterPro)
Clacu03g0119 525 PANTHER PROTEIN PHOSPHATASE 169 518 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu03g0119 525 SMART PP2C_4 201 517 IPR001932 -
Clacu03g0119 525 MobiDBLite consensus disorder prediction 464 489 - -
Clacu03g0119 525 Pfam Protein phosphatase 2C 212 468 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0119 Clacu-Chr3:1341008 Clacu05g1042 Clacu-Chr5:9251315 4.30E-67 dispersed
Clacu03g0119 Clacu-Chr3:1341008 Clacu03g0121 Clacu-Chr3:1363756 2.80E-300 proximal
Clacu03g1657 Clacu-Chr3:30213806 Clacu03g0119 Clacu-Chr3:1341008 9.30E-67 transposed
Clacu05g0899 Clacu-Chr5:7872997 Clacu03g0119 Clacu-Chr3:1341008 9.60E-78 transposed
Clacu07g0046 Clacu-Chr7:784733 Clacu03g0119 Clacu-Chr3:1341008 4.70E-15 transposed
Clacu07g0441 Clacu-Chr7:5333569 Clacu03g0119 Clacu-Chr3:1341008 1.20E-29 transposed
Clacu07g1387 Clacu-Chr7:28696181 Clacu03g0119 Clacu-Chr3:1341008 1.80E-65 transposed
Clacu08g1154 Clacu-Chr8:21589487 Clacu03g0119 Clacu-Chr3:1341008 1.20E-64 transposed
Clacu09g0021 Clacu-Chr9:287041 Clacu03g0119 Clacu-Chr3:1341008 8.40E-07 transposed
Clacu09g0022 Clacu-Chr9:292164 Clacu03g0119 Clacu-Chr3:1341008 1.30E-19 transposed
Clacu11g0816 Clacu-Chr11:8067644 Clacu03g0119 Clacu-Chr3:1341008 4.70E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0119 K14497 - csv:101206871 706.827