Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0121 ATGCGTGTCAAAAAGGAAGTCTCTCTCTTGTCGCGCTGCTCCAATCTTATTGGGCCACGTTTCCACCACCTCCCCAAACTAATTCTACGCGTGTCCTCTTCTGATCAACCCACCCCTTCTCAATCAACGGCTCAGATCTTTCCATTCACTACGTCACGCACTTTACTACCTCTTCGATCTGCCCGTCTCTCCCCGGGTAGCTACCCTTGCCGTCGCCGTCGTCGTCGTCGTCGGCATATTTCGGAGATTGAAGTAATCAACTGCGGCTGGGGTAGGGGGCAGGGGAGATTAAAGAACTTAGTAATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCAAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTATCTCGGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGTCGCAACGGAAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG 1578 55.45 MRVKKEVSLLSRCSNLIGPRFHHLPKLILRVSSSDQPTPSQSTAQIFPFTTSRTLLPLRSARLSPGSYPCRRRRRRRRHISEIEVINCGWGRGQGRLKNLVMAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSRESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1363756 1365804 + ClG42_03g0012100.10 Clacu03g0121 244686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0121 525 Coils Coil 261 297 - -
Clacu03g0121 525 SUPERFAMILY PP2C-like 204 520 IPR036457 -
Clacu03g0121 525 ProSiteProfiles PPM-type phosphatase domain profile. 211 519 IPR001932 -
Clacu03g0121 525 Gene3D - 201 523 IPR036457 -
Clacu03g0121 525 CDD PP2Cc 211 519 IPR001932 -
Clacu03g0121 525 Coils Coil 153 173 - -
Clacu03g0121 525 FunFam Protein phosphatase 2C 50 209 523 - -
Clacu03g0121 525 ProSitePatterns PPM-type phosphatase domain signature. 247 255 IPR000222 GO:0043169(InterPro)
Clacu03g0121 525 PANTHER PROTEIN PHOSPHATASE 169 518 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu03g0121 525 SMART PP2C_4 201 517 IPR001932 -
Clacu03g0121 525 MobiDBLite consensus disorder prediction 464 489 - -
Clacu03g0121 525 Pfam Protein phosphatase 2C 212 468 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0121 Clacu-Chr3:1363756 Clacu11g0816 Clacu-Chr11:8067644 9.90E-88 dispersed
Clacu03g0119 Clacu-Chr3:1341008 Clacu03g0121 Clacu-Chr3:1363756 2.80E-300 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0121 K14497 - csv:101206871 706.827