Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0137 ATGGATAATCTCCTTGAAGATTTTCCCAATTCCTGGAATAGTTATCACTTCTATCCCCATCTCTCTAATGGCTTGTTCAAAGTCAATCGCGAATCCGTTGATCCCCTTCAAATTCCGGCCAAATCCCAGCAGCATCAACACCAACTCAGTAATAATTCCTCTTCTTCGCCGTCGTCGTCGAGCTCCGAAGGTGACTCGCCTGACAGCCATGACACTTCCAATACGATGCTCAAATACATCACCGAGATGCTGATGGATGAAGGAGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGCCAGAAGTATCCCCCTTCTCCAATCGGAAATGGCGATTCTTCTCAGGATTTCAGCTGTGATAGGGCTGTGAGTAATAACGGTGAAGATGAATCGGAATCTTTATATGGTAACTCCTCTGTTTTTGCCCCTTTTCAAAACTCTCTTTTGAATCAAGATTCGTTTCTTGGGATGCAATTTATTGGGCATTTTAGGCAAGGAGCTGAAGAGGCTAGCAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGACTTGGATAATGATTCTTCTACCTCTCTTCCCTCTAGGGCTGTTGATTTTTCTTGGGTTGGTGCTGAAAATGATGGTAGATCCAGCCTTGAAAATGGGTTATTAAGAGAGAAGAAAAACCGTCTTAGGGACGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAACTTTGCCGATGATAATTCACTGTCTGATTTGTTTGATGAGGTTCTTCTTTGTCGGGGTGAGAGTCGGCAGTCCCCATCGTGTGGTTCCGATGAATCGTCGGAGAGCGAAGCGAATAAGAAGTCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAGACCACTCGTTCTAGGAAGCAAGAGAATAGTGTGGGAGTTGTGGATTTGTGGACATTGTTGACTCAATGTGCTCAGGCTGTTTCAAATTATGATCAAAGGACTGCAAATGAGTTGCTAAATCAGATTAGGCAGCATTCTAATCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTTGCCAAGGGTCTTGAGACTCGGCTCGCTGCCGGGACGCCTCTGTATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCTTGCCCGTTTCGGCGGATGTCGTATTTCTATGCCAATAGAACGATTCTGAAGCTAGCTGAGAAAGTAACAACTTTGCATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCTTGCTTGATTCAACGGCTCTCGCGTAGACCTGGTGGACCTCCCAAACTTCGGATCACGGGGATTGAGCTTCCCCAGCCGGGATTCCGACCTGCTGAACGTGTTGAGCAGACTGGCCGTCGCCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAATCGGTTCGATATGAGGATCTCAATCTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCAGACGAAACGGTGGTCGCAAACAGCCCAAGAGACAGGGTTCTAAAGTTAATCAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAATGGCTCATTCAATACTCCATTCTTCAACACAAGGTTTAAGGAAGCACTCTTTTACTACTCATCGTTATTCGACATGTATGAGGCAACTGTACCTCGAGACAATCCGCAGAGGCATCTTTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTCGAGAGAGTCGAAAGGCCAGAGACTTACAAGCAATGGCAAGTAAGGAACACGAGGGCTGGGTTCAAACAAGTACCATTAGACCAAGATCTGCTGAAGAGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGTGATCGATCAGGATGGGTCGTGGATGTTGCAAGGGTGGAAGGGACGGATCATCGACGCGTTATCGTGTTGGGTAGTTGCCTAA 2091 45.15 MDNLLEDFPNSWNSYHFYPHLSNGLFKVNRESVDPLQIPAKSQQHQHQLSNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEGEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPIGNGDSSQDFSCDRAVSNNGEDESESLYGNSSVFAPFQNSLLNQDSFLGMQFIGHFRQGAEEASKFLPVNGRFGTIDLDNDSSTSLPSRAVDFSWVGAENDGRSSLENGLLREKKNRLRDDSDEELRSSKQSANFADDNSLSDLFDEVLLCRGESRQSPSCGSDESSESEANKKSRGRGKRKGKKTTRSRKQENSVGVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYANRTILKLAEKVTTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWESVRYEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRHLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIDALSCWVVA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1501243 1503333 - ClG42_03g0013700.10 Clacu03g0137 244702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0137 696 MobiDBLite consensus disorder prediction 123 150 - -
Clacu03g0137 696 MobiDBLite consensus disorder prediction 278 315 - -
Clacu03g0137 696 ProSiteProfiles GRAS family profile. 315 694 IPR005202 -
Clacu03g0137 696 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 298 693 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu03g0137 696 Pfam GRAS domain family 326 693 IPR005202 -
Clacu03g0137 696 MobiDBLite consensus disorder prediction 39 73 - -
Clacu03g0137 696 MobiDBLite consensus disorder prediction 122 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0137 Clacu-Chr3:1501243 Clacu10g0438 Clacu-Chr10:5453557 5.40E-57 dispersed
Clacu01g1813 Clacu-Chr1:30296991 Clacu03g0137 Clacu-Chr3:1501243 1.80E-32 transposed
Clacu02g0166 Clacu-Chr2:1605443 Clacu03g0137 Clacu-Chr3:1501243 1.00E-29 transposed
Clacu05g2275 Clacu-Chr5:31104180 Clacu03g0137 Clacu-Chr3:1501243 9.40E-39 transposed
Clacu09g0971 Clacu-Chr9:9155066 Clacu03g0137 Clacu-Chr3:1501243 2.80E-56 transposed
Clacu10g2088 Clacu-Chr10:34216627 Clacu03g0137 Clacu-Chr3:1501243 1.00E-154 wgd
Clacu02g2060 Clacu-Chr2:33896320 Clacu03g0137 Clacu-Chr3:1501243 4.30E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47369 PF03514 GRAS 4.30E-115 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0137 K27753 - csv:101217374 1224.15