Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0145 ATGGCTAAAACCGCCATTCTCCTCTGCATTGCGACTATCATTTCAACAATGTGGACGGCCGGCGCCAGAATTCCCGGCGTCTACTCCGGTGGCCCATGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGATGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGTGACAATGGCGGATGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTTAAAATCGCTGAGTATCGCGCCGGAATCGTCCCCGTCGCCTACCGCCGAGTGGCATGCCGGAAGCAAGGGGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGCGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCTTCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 609 56.32 MAKTAILLCIATIISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1596699 1598443 + ClG42_03g0014500.10 Clacu03g0145 244710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0145 202 Gene3D - 67 104 IPR036908 -
Clacu03g0145 202 Gene3D - 21 66 IPR036908 -
Clacu03g0145 202 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 108 IPR007112 -
Clacu03g0145 202 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Clacu03g0145 202 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Clacu03g0145 202 PANTHER EXPANSIN-A15 10 63 IPR002963 GO:0009664(InterPro)
Clacu03g0145 202 SUPERFAMILY Barwin-like endoglucanases 32 126 IPR036908 -
Clacu03g0145 202 Gene3D - 108 200 IPR036749 -
Clacu03g0145 202 FunFam Expansin 108 200 - -
Clacu03g0145 202 PRINTS Expansin signature 154 175 IPR002963 GO:0009664(InterPro)
Clacu03g0145 202 PRINTS Expansin signature 183 199 IPR002963 GO:0009664(InterPro)
Clacu03g0145 202 PRINTS Expansin signature 66 83 IPR002963 GO:0009664(InterPro)
Clacu03g0145 202 PRINTS Expansin signature 83 96 IPR002963 GO:0009664(InterPro)
Clacu03g0145 202 PRINTS Expansin signature 107 119 IPR002963 GO:0009664(InterPro)
Clacu03g0145 202 PRINTS Expansin signature 119 140 IPR002963 GO:0009664(InterPro)
Clacu03g0145 202 Pfam Expansin C-terminal domain 109 186 IPR007117 -
Clacu03g0145 202 SMART dpbb_1 10 98 IPR007112 -
Clacu03g0145 202 SUPERFAMILY PHL pollen allergen 105 197 IPR036749 -
Clacu03g0145 202 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 118 197 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0145 Clacu-Chr3:1596699 Clacu05g2616 Clacu-Chr5:33929896 3.10E-66 dispersed
Clacu07g0742 Clacu-Chr7:17802650 Clacu03g0145 Clacu-Chr3:1596699 3.10E-37 transposed
Clacu02g2063 Clacu-Chr2:33926913 Clacu03g0145 Clacu-Chr3:1596699 2.40E-95 wgd
Clacu03g0145 Clacu-Chr3:1596699 Clacu04g0861 Clacu-Chr4:22946884 7.40E-92 wgd
Clacu03g0145 Clacu-Chr3:1596699 Clacu07g0324 Clacu-Chr7:3670316 3.90E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0145 - - - 0.0