Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0161 ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTACTAACAAACAGCTTCTAAATCCGTCTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGTAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTACTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAGCCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAGGTATCCAATGACAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGTGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTTAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACTGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCTGAAGGGAAAGCTGCCATTGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGGTGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCAGTTCTTGTGCACCTGTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCGCATCAGGAGGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA 2082 46.93 MSKSAVTTNVKTTNKQLLNPSSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTESLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVGVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRVLRLQSSESQPQSQPSQSTSTTEVVGS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1727454 1732263 + ClG42_03g0016100.10 Clacu03g0161 244726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0161 693 FunFam RING-type E3 ubiquitin transferase 281 354 - -
Clacu03g0161 693 Pfam Armadillo/beta-catenin-like repeat 408 447 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 CDD RING-Ubox_PUB 282 334 IPR045210 -
Clacu03g0161 693 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu03g0161 693 SUPERFAMILY RING/U-box 278 357 - -
Clacu03g0161 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Clacu03g0161 693 FunFam RING-type E3 ubiquitin transferase 364 515 - -
Clacu03g0161 693 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Clacu03g0161 693 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu03g0161 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 MobiDBLite consensus disorder prediction 257 276 - -
Clacu03g0161 693 Gene3D - 563 680 IPR011989 -
Clacu03g0161 693 Pfam Mixed lineage kinase domain-like N-terminal domain 52 139 IPR054000 -
Clacu03g0161 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 Gene3D - 30 140 IPR036537 GO:0007166(InterPro)
Clacu03g0161 693 SUPERFAMILY ARM repeat 379 652 IPR016024 -
Clacu03g0161 693 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu03g0161 693 Gene3D - 369 562 IPR011989 -
Clacu03g0161 693 SMART arm_5 572 612 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 SMART arm_5 531 571 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 SMART arm_5 408 448 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 SMART arm_5 449 489 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 SMART arm_5 614 654 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 SMART arm_5 490 530 IPR000225 GO:0005515(InterPro)
Clacu03g0161 693 FunFam RING-type E3 ubiquitin transferase 555 673 - -
Clacu03g0161 693 PANTHER U BOX DOMAIN-CONTAINING 51 654 - -
Clacu03g0161 693 CDD MLKL_NTD 33 161 - -
Clacu03g0161 693 MobiDBLite consensus disorder prediction 249 279 - -
Clacu03g0161 693 MobiDBLite consensus disorder prediction 669 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1482 Clacu-Chr1:26902538 Clacu03g0161 Clacu-Chr3:1727454 1.70E-10 dispersed
Clacu02g1019 Clacu-Chr2:15242675 Clacu03g0161 Clacu-Chr3:1727454 2.20E-81 dispersed
Clacu02g1283 Clacu-Chr2:25584407 Clacu03g0161 Clacu-Chr3:1727454 9.70E-12 dispersed
Clacu03g0161 Clacu-Chr3:1727454 Clacu05g2310 Clacu-Chr5:31476280 1.90E-115 dispersed
Clacu06g0945 Clacu-Chr6:12850835 Clacu03g0161 Clacu-Chr3:1727454 2.30E-16 transposed
Clacu11g1569 Clacu-Chr11:26829994 Clacu03g0161 Clacu-Chr3:1727454 1.50E-36 transposed
Clacu02g2083 Clacu-Chr2:34060589 Clacu03g0161 Clacu-Chr3:1727454 3.10E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0161 K27628 - csv:101218572 1145.18