Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g0161 | ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTACTAACAAACAGCTTCTAAATCCGTCTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGTAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTACTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAGCCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAGGTATCCAATGACAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGTGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTTAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACTGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCTGAAGGGAAAGCTGCCATTGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGGTGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCAGTTCTTGTGCACCTGTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCGCATCAGGAGGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA | 2082 | 46.93 | MSKSAVTTNVKTTNKQLLNPSSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTESLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVGVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRVLRLQSSESQPQSQPSQSTSTTEVVGS | 693 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1727454 | 1732263 | + | ClG42_03g0016100.10 | Clacu03g0161 | 244726 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g0161 | 693 | FunFam | RING-type E3 ubiquitin transferase | 281 | 354 | - | - | |
Clacu03g0161 | 693 | Pfam | Armadillo/beta-catenin-like repeat | 408 | 447 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | Pfam | Armadillo/beta-catenin-like repeat | 491 | 529 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | Pfam | Armadillo/beta-catenin-like repeat | 573 | 612 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | CDD | RING-Ubox_PUB | 282 | 334 | IPR045210 | - | |
Clacu03g0161 | 693 | SMART | Ubox_2 | 284 | 347 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu03g0161 | 693 | SUPERFAMILY | RING/U-box | 278 | 357 | - | - | |
Clacu03g0161 | 693 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 354 | IPR013083 | - | |
Clacu03g0161 | 693 | FunFam | RING-type E3 ubiquitin transferase | 364 | 515 | - | - | |
Clacu03g0161 | 693 | FunFam | RING-type E3 ubiquitin transferase | 28 | 141 | - | - | |
Clacu03g0161 | 693 | Pfam | U-box domain | 281 | 351 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu03g0161 | 693 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 542 | 584 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | MobiDBLite | consensus disorder prediction | 257 | 276 | - | - | |
Clacu03g0161 | 693 | Gene3D | - | 563 | 680 | IPR011989 | - | |
Clacu03g0161 | 693 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 52 | 139 | IPR054000 | - | |
Clacu03g0161 | 693 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 419 | 461 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | Gene3D | - | 30 | 140 | IPR036537 | GO:0007166(InterPro) | |
Clacu03g0161 | 693 | SUPERFAMILY | ARM repeat | 379 | 652 | IPR016024 | - | |
Clacu03g0161 | 693 | ProSiteProfiles | U-box domain profile. | 280 | 354 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu03g0161 | 693 | Gene3D | - | 369 | 562 | IPR011989 | - | |
Clacu03g0161 | 693 | SMART | arm_5 | 572 | 612 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | SMART | arm_5 | 531 | 571 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | SMART | arm_5 | 408 | 448 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | SMART | arm_5 | 449 | 489 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | SMART | arm_5 | 614 | 654 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | SMART | arm_5 | 490 | 530 | IPR000225 | GO:0005515(InterPro) | |
Clacu03g0161 | 693 | FunFam | RING-type E3 ubiquitin transferase | 555 | 673 | - | - | |
Clacu03g0161 | 693 | PANTHER | U BOX DOMAIN-CONTAINING | 51 | 654 | - | - | |
Clacu03g0161 | 693 | CDD | MLKL_NTD | 33 | 161 | - | - | |
Clacu03g0161 | 693 | MobiDBLite | consensus disorder prediction | 249 | 279 | - | - | |
Clacu03g0161 | 693 | MobiDBLite | consensus disorder prediction | 669 | 693 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1482 | Clacu-Chr1:26902538 | Clacu03g0161 | Clacu-Chr3:1727454 | 1.70E-10 | dispersed | |
Clacu02g1019 | Clacu-Chr2:15242675 | Clacu03g0161 | Clacu-Chr3:1727454 | 2.20E-81 | dispersed | |
Clacu02g1283 | Clacu-Chr2:25584407 | Clacu03g0161 | Clacu-Chr3:1727454 | 9.70E-12 | dispersed | |
Clacu03g0161 | Clacu-Chr3:1727454 | Clacu05g2310 | Clacu-Chr5:31476280 | 1.90E-115 | dispersed | |
Clacu06g0945 | Clacu-Chr6:12850835 | Clacu03g0161 | Clacu-Chr3:1727454 | 2.30E-16 | transposed | |
Clacu11g1569 | Clacu-Chr11:26829994 | Clacu03g0161 | Clacu-Chr3:1727454 | 1.50E-36 | transposed | |
Clacu02g2083 | Clacu-Chr2:34060589 | Clacu03g0161 | Clacu-Chr3:1727454 | 3.10E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g0161 | K27628 | - | csv:101218572 | 1145.18 |