Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0162 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCACCACCATCCTCAGATAAGTAGTAATAATAATGGATCTCCTCAACACCAACACCACCTTCTTTCATTGCCTACTCAGCAACTCTCCTCCTCACCGTTGTCTCATGTCGGTGGTGGCGGTGGTGTTAGCTCAATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACAGCACTCAAGTGTCCTCGATGTGATTCAACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCAGTTGGGGGCGGTTGTCGCCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCGGCTGCAGCTCCGGCCGGAAATGAAACTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAATACCCTTGCACAGTAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTCAACGAGATCCAGGCTCAAGGTAACGATATCGGCAACGGCGCCCTTCTGAATCATCATCTGTGGCGTGGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACTCCACCCGGGTTGTACCCGTTTCAAATTAGCGGCGGGGACGGCGACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGAAGCCCCTATTGATCAGATCATCATCTTCAAATTGGCATCTCTCAGCTCACAGCTTTGTAGCACTCTTCTAGCTCTCTTCAGCTTCTGA 1047 46.23 MDFSSVPIYLDPPPNWHQQSNHHHHHHPQISSNNNGSPQHQHHLLSLPTQQLSSSPLSHVGGGGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAPAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQGNDIGNGALLNHHLWRGSQNFPLSGGLETPPGLYPFQISGGDGDDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNEAPIDQIIIFKLASLSSQLCSTLLALFSF 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1748121 1749606 + ClG42_03g0016200.10 Clacu03g0162 244727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0162 348 Pfam Dof domain, zinc finger 89 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu03g0162 348 MobiDBLite consensus disorder prediction 11 43 - -
Clacu03g0162 348 ProSitePatterns Zinc finger Dof-type signature. 92 128 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu03g0162 348 MobiDBLite consensus disorder prediction 156 171 - -
Clacu03g0162 348 ProSiteProfiles Zinc finger Dof-type profile. 90 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu03g0162 348 MobiDBLite consensus disorder prediction 135 171 - -
Clacu03g0162 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 85 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0162 Clacu-Chr3:1748121 Clacu07g0315 Clacu-Chr7:3531525 7.80E-41 dispersed
Clacu10g2073 Clacu-Chr10:34128820 Clacu03g0162 Clacu-Chr3:1748121 6.50E-40 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu03g0162 Clacu-Chr3:1748121 5.10E-37 wgd
Clacu02g2141 Clacu-Chr2:34595191 Clacu03g0162 Clacu-Chr3:1748121 5.10E-29 wgd
Clacu03g0162 Clacu-Chr3:1748121 Clacu04g0873 Clacu-Chr4:23098820 9.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47370 PF02701 zf-Dof 1.50E-32 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0162 - - - 0.0