Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0166 ATGGCGAAAACCCTAATTTCATCTTCACCCTTCGTCGGTTCTTCTCTCCCATCTCTCTCTCGCCATGCTCGTCTCCACACTCTTCCTCACCGGAGACACGTCGCCACCAGAGTCAATTTCAGCTTCCATCAACTTCCCCCCATCCATACCTTTGATTCTGCATTCGATTTTCAAGCAATTGTTAGCAGAGCCGAAGGCCTGCTCTATACACTTGCTGACGCAGCGGTTGCAGTGGATTCCACTCTTTCAGGTGGCGCCGCATCCACTTCCGCTGATACCGCGGTGCAGAAGAATGGCGGATGGTTTGGATTTATCTCCGAGGCCATGGAAGTGGTTCTTAAAGTGTTGAAGGATGGACTTGCGGCTGTGCACGTCCCATATTCATATGGATTTGCAATTATTTTACTTACTGTTATCGTTAAAGTTGCAACTTTTCCCCTCACTAAGCAGCAGGTTGAGTCAACATTGGCTATGCAAAATCTTCAACCGAAGATTAAAGCCATCCAACAAAGATATGCAGGCAATCAGGAAAGAATACAACTTGAGACATCACGACTTTATAGACAAGCAGGAGTTAATCCTTTGGCAGGTTGTTTCCCAACTTTAGCCACCATACCTGTCTGGATTGGCCTATATCAGGCCCTTTCTAATGTGGCAAATGAGGGATTATTGACTGAAGGTTTCTTTTGGATCCCCTCTCTTGGTGGTCCAACTACTATTGCTGCTCGACAAAGTGGATCTGGAATTTCTTGGTTGTTTCCTTTTGTGGATGGCCATCCACCATTGGGCTGGTCTGACACCGCAGCATACCTTGTATTACCTGTTCTCCTCGTCATATCTCAGTATGTATCGATGGAACTGATGAAGCCTCCCCAGACTGATGATCCAGCACAAAAGAACACACTCCTTATTTTCAAGTTTCTTCCCCTCATGATCGGTTACTTCTCCTTGTCTGTTCCATCAGGATTATCAATTTACTGGTTCACAAACAATGTTCTCAGCACGGCTCAGCAAGTATGGTTACGCAAGTTAGGAGGTGCAAAGCCTGTTGTAAGTGAGGATGCTGCTGGAATCATAACAGCTGGACGTGCCAAACGAACATCTGAATCAGGAAGAAACGGTGACAGGTTTAGGCAGTTAAGGGAAGATGAGAAGAAGAATAAGTTAAGCAAGGCAGCTCGATCAGAAGAGATTCAAACTTTGGCTTCTGAGTCTGATAATGAGGATGGGTATGATAGGGAGACAATTGAGAAGGGTGAGGACAGTCTAGAAGAGGCATATGCATCAAGTGCAGACAAAGACATCCCAGCCTATAATCGACAAAAGAGAAGCAAACGATCAAAGAGGAAACGTGCAGGAGGCTTAGCCTCTTCTTTAATTGGTGGTTTACTGTTTTGTGAGAAGTTCATATCGATATCTAACGTCCTTCTGATTTGTTGTGGCTTGACACGCCTTAACGATCACGATGTTTCTGAATTTACCGACACGGCTTACTTGTCTAAGAAG 1506 45.22 MAKTLISSSPFVGSSLPSLSRHARLHTLPHRRHVATRVNFSFHQLPPIHTFDSAFDFQAIVSRAEGLLYTLADAAVAVDSTLSGGAASTSADTAVQKNGGWFGFISEAMEVVLKVLKDGLAAVHVPYSYGFAIILLTVIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQTDDPAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVSEDAAGIITAGRAKRTSESGRNGDRFRQLREDEKKNKLSKAARSEEIQTLASESDNEDGYDRETIEKGEDSLEEAYASSADKDIPAYNRQKRSKRSKRKRAGGLASSLIGGLLFCEKFISISNVLLICCGLTRLNDHDVSEFTDTAYLSKK 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1793362 1799430 + ClG42_03g0016600.10 Clacu03g0166 244731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0166 502 MobiDBLite consensus disorder prediction 361 413 - -
Clacu03g0166 502 MobiDBLite consensus disorder prediction 368 393 - -
Clacu03g0166 502 NCBIfam membrane protein insertase YidC 128 342 IPR028055 -
Clacu03g0166 502 PANTHER OXA1 30 386 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(PANTHER)|GO:0032977(InterPro)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Clacu03g0166 502 CDD 5TM_YidC_Alb3 130 343 IPR047196 -
Clacu03g0166 502 Pfam 60Kd inner membrane protein 129 343 IPR028055 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0166 Clacu-Chr3:1793362 Clacu08g1905 Clacu-Chr8:28229773 2.50E-120 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0166 K03217 - csv:101217620 805.053