Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0207 ATGGTAAAGTGCTACCCTACTGTAAGTGAGGAATATCAGAAGGCCATTGAAAAGGCTAAGAGAAAACTCAGAGGACTCATCGCTGAGAAGAACTGTGCTCCTCTAATTCTTCGTCTTGCATGGCACTCTGCTGGAACCTTTGACCATAAAACCAAGACCGGTGGTCCTTTTGGAACTATAAGGTTCTCTAGTGAGCTCGCCCATGGCGCCAACAATGGCCTCGACATCGCTGTTAGGCTATTGGAGCCCATCAAGCAGCAGTTCCCAATCCTCTCATATGCAGACTTTTACCAGTTGGCTGGTGTTGTTGCTGTTGAGGTTACTGGAGGGCCTGAAGTTCCTTTCCACCCTGGTAGAGAGGACAAACCCGAACCCCCCCCAGAAGGTCGCTTGCCTGACGCCACTAAGGGTTCTGATCATCTGAGGGATGTTTTCTACACCATGGGTCTCTCGGACCAGGACATTGTTGCCCTCTCTGGCGGTCACACATTGGGTAGGGCACACAAAGAACGATCTGGTTTTGAGGGGCCGTGGACTTCCAACCCTCTCATCTTTGATAATTCATACTTCACTGAACTCTTGAGCGGGGAGAAGGAAGGCCTTCTGCAGTTGGCATCAGACAAGGCACTTCTGTCTGATCCCGTCTTCCGCCCCCTTGTTGAAAAATATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCTCACCAGAAGCTTTCTGAGTTAGGAATCGAAGAATTTGATACAGGAGGTGTTTCAGAGCAAAGGGTTTCCAAGATTATGGCTGATGTTGCTCAGAACAACCCCGCTGATTTTCCTGCTGTTTCAACCCATGGTGGCCAATACGTTCAGTACAATATCTTTGGGAATCCCTTCGAAATAACCTCCAAATATCGTCCCCCGATTATGCCTATAGGTCGCGGAGCATACGGAATCGTATGTTCTGTTTTGAATTCGGAGACCAACGAAATGGTTGCGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTCCGTGAGATTAAGCTTCTTCGCCATTTGGATCATGAAAATGTTATAGGCATTAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACCGATCTTCACCAAATAATCCGTTCCAACCAAAGTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTGAAATACATACATTCTGCCAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAATTGTGATCTTAAAATATGTGACTTTGGGCTTGCTCGGCCAACTTCGGAAAATGAATGTATGACGGAATATGTTGTCACAAGATGGTATAGAGCACCTGAGCTTCTATTGAACTCTGATTATACAGCTTCTATTGATATCTGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAACAGAAGGCCTTTATTCCCAGGAAGGGATCATGTGCATCAGATGCGATTATTAACTGAGCTTCTCGGCACACCAACCGAGTCAGATCTTGGTTTTATTCGAAATGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACTTCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCATTGGCAATTGATCTTGTGGATAAAATGTTGACGTTTGACCCAAAAAGGAGAATTACTGTTGAAGAAGCGTTGGCACATCCATACCTAGAAAGATTGCATGACACAGCGGATGAGCCGGTTTGCCCAGAGCCATTCTCGTTCGAGTTTGAGCAACAATTCTTAGATGAAGAACAGATGAAGGAGATGATTTACAGAGAGGCATTAGCACTCAATCCAGAATTTGCATGA 1899 45.18 MVKCYPTVSEEYQKAIEKAKRKLRGLIAEKNCAPLILRLAWHSAGTFDHKTKTGGPFGTIRFSSELAHGANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFYTMGLSDQDIVALSGGHTLGRAHKERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLASDKALLSDPVFRPLVEKYAADEDAFFADYAEAHQKLSELGIEEFDTGGVSEQRVSKIMADVAQNNPADFPAVSTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTASIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPLPRQPLATVFPHVHPLAIDLVDKMLTFDPKRRITVEEALAHPYLERLHDTADEPVCPEPFSFEFEQQFLDEEQMKEMIYREALALNPEFA 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2290928 2299370 - ClG42_03g0020700.10 Clacu03g0207 244772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0207 632 ProSitePatterns MAP kinase signature. 336 439 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0207 632 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 294 624 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu03g0207 632 Coils Coil 9 29 - -
Clacu03g0207 632 SMART serkin_6 301 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0207 632 FunFam Cytosolic ascorbate peroxidase 19 137 - -
Clacu03g0207 632 ProSiteProfiles Plant heme peroxidase family profile. 74 270 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 CDD STKc_TEY_MAPK 294 629 - -
Clacu03g0207 632 ProSitePatterns Peroxidases proximal heme-ligand signature. 154 164 IPR019793 -
Clacu03g0207 632 SUPERFAMILY Heme-dependent peroxidases 5 248 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Haem peroxidase superfamily signature 33 47 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Haem peroxidase superfamily signature 154 169 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Haem peroxidase superfamily signature 91 108 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Haem peroxidase superfamily signature 109 121 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0207 632 Pfam Protein kinase domain 306 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0207 632 FunFam L-ascorbate peroxidase, cytosolic 132 238 - -
Clacu03g0207 632 Pfam Peroxidase 26 226 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 Gene3D Transferase(Phosphotransferase) domain 1 385 613 - -
Clacu03g0207 632 CDD ascorbate_peroxidase 5 248 - -
Clacu03g0207 632 Gene3D - 19 245 - -
Clacu03g0207 632 Gene3D Peroxidase, domain 2 132 238 - -
Clacu03g0207 632 ProSiteProfiles Protein kinase domain profile. 301 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0207 632 ProSitePatterns Peroxidases active site signature. 33 44 IPR019794 GO:0004601(InterPro)
Clacu03g0207 632 FunFam Mitogen-activated protein kinase 286 395 - -
Clacu03g0207 632 Gene3D Phosphorylase Kinase; domain 1 284 623 - -
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 12 32 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 33 48 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 65 89 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 51 61 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 109 121 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 130 147 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 170 194 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 148 169 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 196 221 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 PRINTS Plant ascorbate peroxidase signature 90 108 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0207 632 ProSitePatterns Protein kinases ATP-binding region signature. 307 331 IPR017441 GO:0005524(InterPro)
Clacu03g0207 632 MobiDBLite consensus disorder prediction 115 136 - -
Clacu03g0207 632 FunFam Mitogen-activated protein kinase 385 613 - -
Clacu03g0207 632 SUPERFAMILY Protein kinase-like (PK-like) 306 594 IPR011009 -
Clacu03g0207 632 MobiDBLite consensus disorder prediction 113 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2109 Clacu-Chr1:32781139 Clacu03g0207 Clacu-Chr3:2290928 3.00E-87 dispersed
Clacu02g0443 Clacu-Chr2:3995253 Clacu03g0207 Clacu-Chr3:2290928 1.70E-92 dispersed
Clacu02g2132 Clacu-Chr2:34461034 Clacu03g0207 Clacu-Chr3:2290928 9.40E-119 dispersed
Clacu03g0207 Clacu-Chr3:2290928 Clacu08g1174 Clacu-Chr8:21726395 2.90E-171 dispersed
Clacu08g0728 Clacu-Chr8:17135396 Clacu03g0207 Clacu-Chr3:2290928 3.90E-56 dispersed
Clacu11g1610 Clacu-Chr11:27258738 Clacu03g0207 Clacu-Chr3:2290928 1.50E-12 dispersed
Clacu03g0207 Clacu-Chr3:2290928 Clacu03g0215 Clacu-Chr3:2385719 2.70E-148 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73399 PF00069 Pkinase 2.30E-73 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0207 K20536 - csv:101202796 717.613