Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0215 ATGGAGAATGATTCTTCTTCCGCTATGGAAATCAAAGGCCTTCCCACTTACGACGGCAAATACTTACTCTACAATGTTCTCGGCAACTTCTTCGAGGTCTCTGCCAAGTACTCCCCTTCAATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACCAATTCTGAGACGAAAGAAGAGGTAGCGATTAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTCCTTTGCCATATGGATCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAGAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATACGCTCTACCCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACTTGCTTCTTAATGCAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTAACAAGATGGTATCGAGCCCCTGAGCTACTACTCAACACTTCTGAATACACAGCAGCAATAGATATTTGGTCGGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAGCCACTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGTTGCTAGGTTCACCAGATGACTCAGATCTTGGGTTTCTTAGAAGTGATAATGCAAGGAAGTATGTTAAGCAACTTCCTTATTTCCCGAAACAACCACTAACCGAAAAGTTCCCAGATCTTCCTCCACTAGCAGTTGATCTTGCAGAGAGGATGCTGCTCTTTGATCCAAGCAAGAGAATAACCGTCGAGGAGGCGATGAATCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTCGAACAGGCATCCTTGGATGAAGAAGACATAAAAGAGCTTATATGGAGGGAGTCTCTCAATTTCAATCCAAATCACATTTAG 1113 41.42 MENDSSSAMEIKGLPTYDGKYLLYNVLGNFFEVSAKYSPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPYFPKQPLTEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLNFNPNHI 370
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2385719 2388237 + ClG42_03g0021500.10 Clacu03g0215 244780
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0215 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0215 370 Gene3D Phosphorylase Kinase; domain 1 21 361 - -
Clacu03g0215 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 361 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu03g0215 370 SUPERFAMILY Protein kinase-like (PK-like) 41 330 IPR011009 -
Clacu03g0215 370 Pfam Protein kinase domain 42 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0215 370 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0215 370 SMART serkin_6 38 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0215 370 CDD STKc_TEY_MAPK 31 367 - -
Clacu03g0215 370 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524(InterPro)
Clacu03g0215 370 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0215 370 FunFam Mitogen-activated protein kinase 122 351 - -
Clacu03g0215 370 FunFam Mitogen-activated protein kinase 23 132 - -
Clacu03g0215 370 Gene3D Transferase(Phosphotransferase) domain 1 122 351 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0238 Clacu-Chr1:2331653 Clacu03g0215 Clacu-Chr3:2385719 2.40E-168 dispersed
Clacu03g0215 Clacu-Chr3:2385719 Clacu06g0341 Clacu-Chr6:4147476 1.20E-167 dispersed
Clacu03g0207 Clacu-Chr3:2290928 Clacu03g0215 Clacu-Chr3:2385719 2.70E-148 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73400 PF00069 Pkinase 1.10E-69 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0215 K04371 - csv:101218403 731.095