Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0218 ATGGGTTGCTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGAACATCGAAGAAAACAACCCCCATACCTTCAATTCCAAAACCCACAAGCCCGTTGATCGAACGCCTTCAGATAAAGCCAAAGTAAATTCAAGTTTGGCAGTGAAGAGGGATTCTGATGTGAAGGTGGTTGTGACAAAAGATGACCAATTGGCTTTAGATGTAAAGAAATTGAATTTAAAAGATGAGGTTTCTGAGGAAGGAGAATCCAATGGCCGTGCCAAGACTTTTACGTTTGAAGAACTCGCTGCTGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGCAGAAAGTTAATGAGGTTGTAGCAATCAAACAACTTGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTCGAAGTCTTGACTTTAAGTCTAGCTGATCATCCTAACCTTGTAAAACTTATTGGCTTTTGTGCTGAGGGGGATCAGAGGTTGTTGGTTTATGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCTCCAGTTATATATCGTGATCTGAAATGTTCAAACATTTTGCTCGGTGAAGGATATCATCCGAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCTCCAGATTATGCAATGACGGGCCAACTGACATTCAAATCAGATATTTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCGCGACCTTTGTTCCGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCATTGCTCCAAGGACAATATCCAGTGAGAGGATTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCGAATATGCGGCCAGTTATATCTGATGTGGTAACCGCCTTAAACTACCTGGCTTCCCAGAAATATGATCCCCAATCTCAACCAAACCATAGCTCCCAAAAGAGACCATCTTCTCTTAAAATGGAACGGAATGATGATAAGAGGGAACGGGACGATGATAAGAGGGAAACTTCAGACAACGAGGGGTCAGAGAGAGAGAGTGAGACAGGAGAGAATACATTGTAG 1314 43.46 MGCFRCTGSSSKKSENIEENNPHTFNSKTHKPVDRTPSDKAKVNSSLAVKRDSDVKVVVTKDDQLALDVKKLNLKDEVSEEGESNGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPLLQGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQSQPNHSSQKRPSSLKMERNDDKRERDDDKRETSDNEGSERESETGENTL 437
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2422582 2425425 + ClG42_03g0021800.10 Clacu03g0218 244783
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0218 437 Gene3D Phosphorylase Kinase; domain 1 71 179 - -
Clacu03g0218 437 MobiDBLite consensus disorder prediction 1 44 - -
Clacu03g0218 437 SMART serkin_6 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0218 437 MobiDBLite consensus disorder prediction 384 398 - -
Clacu03g0218 437 Gene3D Transferase(Phosphotransferase) domain 1 180 407 - -
Clacu03g0218 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0218 437 PANTHER OS07G0668900 PROTEIN 52 405 - -
Clacu03g0218 437 MobiDBLite consensus disorder prediction 399 437 - -
Clacu03g0218 437 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Clacu03g0218 437 CDD STKc_IRAK 109 378 - -
Clacu03g0218 437 SUPERFAMILY Protein kinase-like (PK-like) 89 398 IPR011009 -
Clacu03g0218 437 MobiDBLite consensus disorder prediction 384 437 - -
Clacu03g0218 437 Pfam Protein kinase domain 108 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0218 437 FunFam probable serine/threonine-protein kinase RLCKVII 75 179 - -
Clacu03g0218 437 FunFam Serine/threonine-protein kinase PBS1 180 396 - -
Clacu03g0218 437 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0218 437 MobiDBLite consensus disorder prediction 16 38 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0218 Clacu-Chr3:2422582 Clacu10g2037 Clacu-Chr10:33832738 1.20E-144 dispersed
Clacu02g2129 Clacu-Chr2:34441134 Clacu03g0218 Clacu-Chr3:2422582 3.80E-150 wgd
Clacu02g2181 Clacu-Chr2:34980623 Clacu03g0218 Clacu-Chr3:2422582 1.40E-55 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73401 PF00069 Pkinase 6.00E-44 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0218 - - - 0.0