Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0232 ATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCAAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAACTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCATCATCCAACCTTCATAAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGTCACCGCCACTGTCGCTGCCGATCAAACCTCCCTTGCCCACAATTTTCCTAACATTATCTCCGACCACGACGGCGACCACAAGCCCCATCCTCTTCCGCTGTCGTCGCCACCGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCCCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGCCGCGGTCTTATCGGATGGCCGTCCGATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCGCGGCCATTAG 1194 51.42 MMSEFDGLSGLSTISNLIGQHNHPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALTEENSRINHHHHHHHHPTFINNFSPTSSSLLLQPNFVTATVAADQTSLAHNFPNIISDHDGDHKPHPLPLSSPPQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAAAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSRGH 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2645114 2647699 - ClG42_03g0023200.10 Clacu03g0232 244797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0232 397 FunFam protein indeterminate-domain 5, chloroplastic-like 96 175 - -
Clacu03g0232 397 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Clacu03g0232 397 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 117 141 - -
Clacu03g0232 397 SUPERFAMILY beta-beta-alpha zinc fingers 41 138 IPR036236 -
Clacu03g0232 397 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 144 182 - -
Clacu03g0232 397 Gene3D Classic Zinc Finger 38 65 - -
Clacu03g0232 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 64 IPR013087 -
Clacu03g0232 397 Gene3D Classic Zinc Finger 76 167 - -
Clacu03g0232 397 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 381 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu03g0232 397 FunFam protein indeterminate-domain 12-like 21 89 - -
Clacu03g0232 397 SMART c2h2final6 42 64 IPR013087 -
Clacu03g0232 397 SMART c2h2final6 83 113 IPR013087 -
Clacu03g0232 397 SMART c2h2final6 118 138 IPR013087 -
Clacu03g0232 397 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 79 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0232 Clacu-Chr3:2645114 Clacu04g0935 Clacu-Chr4:23612608 7.50E-80 dispersed
Clacu03g0232 Clacu-Chr3:2645114 Clacu10g2010 Clacu-Chr10:33578026 1.40E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47376 PF12171 zf-C2H2_jaz 5.50E-05 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0232 K25870 - csv:101212420 565.459