Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0241 ATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA 531 42.0 MEKNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2828966 2830474 - ClG42_03g0024100.10 Clacu03g0241 244806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0241 176 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Clacu03g0241 176 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Clacu03g0241 176 Coils Coil 93 120 - -
Clacu03g0241 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0241 Clacu-Chr3:2828966 Clacu07g0465 Clacu-Chr7:5665260 2.20E-36 dispersed
Clacu03g0241 Clacu-Chr3:2828966 Clacu03g0243 Clacu-Chr3:2857378 7.90E-66 proximal
Clacu02g2145 Clacu-Chr2:34638935 Clacu03g0241 Clacu-Chr3:2828966 7.00E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47377 PF03195 LOB 6.20E-39 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0241 - - - 0.0