Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0243 ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 609 50.41 MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2857378 2858390 + ClG42_03g0024300.10 Clacu03g0243 244808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0243 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 158 - -
Clacu03g0243 202 MobiDBLite consensus disorder prediction 1 29 - -
Clacu03g0243 202 Coils Coil 117 144 - -
Clacu03g0243 202 MobiDBLite consensus disorder prediction 1 20 - -
Clacu03g0243 202 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Clacu03g0243 202 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1426 Clacu-Chr2:27634334 Clacu03g0243 Clacu-Chr3:2857378 2.20E-50 dispersed
Clacu02g2145 Clacu-Chr2:34638935 Clacu03g0243 Clacu-Chr3:2857378 2.40E-55 dispersed
Clacu03g0243 Clacu-Chr3:2857378 Clacu07g0465 Clacu-Chr7:5665260 8.90E-37 dispersed
Clacu03g0241 Clacu-Chr3:2828966 Clacu03g0243 Clacu-Chr3:2857378 7.90E-66 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47378 PF03195 LOB 4.50E-41 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0243 - - - 0.0