Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g0243 | ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA | 609 | 50.41 | MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT | 202 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2857378 | 2858390 | + | ClG42_03g0024300.10 | Clacu03g0243 | 244808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g0243 | 202 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 36 | 158 | - | - | |
Clacu03g0243 | 202 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Clacu03g0243 | 202 | Coils | Coil | 117 | 144 | - | - | |
Clacu03g0243 | 202 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Clacu03g0243 | 202 | ProSiteProfiles | LOB domain profile. | 37 | 138 | IPR004883 | - | |
Clacu03g0243 | 202 | Pfam | Lateral organ boundaries (LOB) domain | 38 | 135 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1426 | Clacu-Chr2:27634334 | Clacu03g0243 | Clacu-Chr3:2857378 | 2.20E-50 | dispersed | |
Clacu02g2145 | Clacu-Chr2:34638935 | Clacu03g0243 | Clacu-Chr3:2857378 | 2.40E-55 | dispersed | |
Clacu03g0243 | Clacu-Chr3:2857378 | Clacu07g0465 | Clacu-Chr7:5665260 | 8.90E-37 | dispersed | |
Clacu03g0241 | Clacu-Chr3:2828966 | Clacu03g0243 | Clacu-Chr3:2857378 | 7.90E-66 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47378 | PF03195 | LOB | 4.50E-41 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g0243 | - | - | - | 0.0 |