Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0254 ATGATTGCAGCAGCAGGGTCGAGCTCCAATGGCGGAATTGGGAGCGGAGAATTGGCCAATTTTGTCCGGCAAGTGGTGGTGGGGCGGTGGTTTTCTCTTTTTGCTTCGTTCCTTGTAATGACCGGCGCCGGCGGAGTTTATTTGTTCGCTTATTACTCTAGAGACATCAAAAAGACGCTCCAATGTGATCAAACGACACTAAACAAAATTGGGTTTTACAAAGATTTGGGATCCAACGTGGGCGTTATTGCCGGACTTCTGGCGGAGGTGGCGCCAACTTGGCTCGTTCTTCTCATCGGCGCCGCCTTCAATTTTCTTGGCTACTTTAAGATATGGCAAGCCGTCACCGGAAAAATTGTTCAGCCCACCGTCGCCTTCTTTTGCTTTTACATGATGGTTGGAGCTAACTCTCAGAATTTTGCCAATACAGGAGTGCTTGTCACGTGCGTGAAGAACTTCCCAGAAAGAAGAGGAGTGATGTTGGGCCTTCTTAAGGGCTTTGTGGGCCTAAGCGGAGCTATCATGACCCAACTTTACATTGCGATTTACGGCCACGATACCAAATCTCTTGTTCTTCTAATCGCCTGGTTTCCTTCTATAATCTCTTTGATCTTCGTCTACACAATCAGAGAAATCAAAGCCGTAAAACACCCAAATGAATTTAGAGTTTTCGTTCAATTCCTTTGCGTCACAGTCCTTTTAGCCATCTTCCTCACCGTCTTAGTCTTCGTTCAAAAACGAGTCCGATTCCATCAATCAGCTCACATCGCCATTGTCTCTGCCATTCTTGCTCTGCTTTTTGTTCCATTGTTAATCGCCATTAGAGAAGAACTCCTTCTCTGGAATCTCAATAAACGAACTATTCCTACAAACCCTTTCACCAGAATTAGAATCGAAAACAACCCCCAGACAACAACAACCCCAATTCCTTCTTCAAATCAAACTCAATTCAGTTCTTGTTTCGCTAACATTTTCAACAAACCCGAAAGAGGCGAAGATTACACAGTTCTTCAAGCGATTTTCAGTATCGATATGCTTATTTTATGTTCCGCTATGTTAATCGGCGTCGGTGCAAGCTTAACCGCCATTGACAATCTAGGGCAAATCGGTGAATCCCAAGGCTACCCATCTGAAACAATCAACTCATTCATCTCTTTAGTAAGTATTTTCAACTTCACTGGTAGAATCTTTTCTGGGTTCGTCTCGGAAATCTTGCTTGAGAAATTCAAATTCCCTAGGCCATTGATGCTCACACTCATCCTCTTGATTTCCTGTATTGGGCATCTTTTGGTAGCCTTTCCCTTTGAGGATTCGCTCTTCGTTGCTTCAATCATAATTGGATTTTCAATGGGGTCTCAAGTTCCATTGCATTTCGCGATGATTTCAGAGATTTTTGGGCTGAAACATTACTCGACTTTGTTTAATTTTGGGCAATTGTCTTGTCCAATTGGGTCTTATATTCTGAATGTAATGGTGACTGGGAAGATGTATGATAAGGTAGCGCAATTGGGGAGTAATCCAAACAAGTTTCATTGTGCAGGAAGTCATTGTTATGAACAATCGTTTTTGATTTTGGGTGGATTAACGTTTATTGTAGCGATGATATCGTTGGTTTTGGTGATGAGGACGAGGGATTTTTATAGAGGGGATATATACAAGAAATTCAGGGAAGATATGGAATCTTTGAAGACGGAAGTCGAGTTTTACAAAGTGAATGAGAAGAGGACTAGGATTGGGAATTTACTTGTTGATAAACATACCATCAATTTCAAGAGCGAACCATTTTCAAATTGTACTCATCCGGAAACTTCTCTATGTCCCCTGCTTGCTTCCATTTTGGCGCTGTTCTTTCAAAATTCCGTAGCAGTAACTGAAAATCCGAAGAGAGAGAACAATTGCTTGAAATCCATGGAAATGGATGGTCCTCTAGACTTCGAGTCGAAAGACCCGCTTCTCAGTTCCCCAGTCACTCTCAAGAAAAGGAAAAAGATTATAGGGTTAGATGATCTTCTGACTGATCACTACAAGGATAAATGTAAGCTGGTTGAGAAAGAATCTAAACAGGCAAAGAAGAAAAAGAACTATGATTCAGATGATGATGATTTTGGCAAAGAGGCTGTGGTGTCCCAAGTCGTTGATGAATGTCAAAATAAGATGAATCAATTGGGAGGTGAGGAAGATACATCCATATGGGGGTTAAACGTTTTTGGAGAACAGAGACCCCCACCAGCTTTACAAAGTCATGAACTCGAAAGTTGCCACTTTTTGCAAACATTCCTAAATAATGAAGTTAATTCTTTGGTGAATCTCACTGTGGAGAAAGGTGATGCTTTCCTTGAAGGTTTATTGGTAAATGGTTGGCTGTCAACACTTGTTTCTTTGACAGGTCGTGCAGAAAAGTCACTTGCCATATGGACTTTCAATTTAATGTTATATTCATCAAGAGAAGATCTAAGAACATCAGCTTGTGATTTCTGGAGGGATGTCATGTTAACAACAAATGAGGTTGAGCAGCAGCATCTCCAAATCGATTGGATTCCTAACTATGCTCAGTTAGGAGAAGCTCTTGAGAGTTACGGGTATAGATTTGAATGCTCATTAAACCCTGGATTCGTCCACACTGGTTCTGGACGTGGAGGGCCACCTCAGAATATAAGGGCTTGGATCAAATTTATTACTATTTGTTGTCAAACAAAGATTAAATATAATATATTTACGTCCTCTGAAGTTGAGCGGCTAGCTGAAGCCATTATTTGTTTATTTCTTGACCGCCAGTTTCAAGGCATAACCATGCTCTTATGTGAATGCCTGCAATCGCTAATCAATTACTTCACAGATGAAGAATGGAAGGCATGTTGTGAAAACATAGCAAAATCTCTTGTCTGCAGAATTCCTATGGATCTAAACTGTTTGCGAGCTGTGGAATGCATTTCTGGAGTTGATCTGCGTAGTAAATATCTGAGGAGTACAATTGCCTATCAAATTCTTCTTATTTGCTTTGAAAATGAGGCTACCAATGAAGAAGAGGTTTTGAGAGTACTTACTTCCATTACCGTGAAAGACAAAAGTTGTGACCTATTTAAGCTATACATTTACTTGGTGTTGACGGAGAACTGGCTCGTCGGTAGTCGAATGTTAGAAGGCAAACCACTAATCTGTGAAATGTGGGGTCTGTTTCTCAGAAACTGCTCCTGCCAAATCGCCAGTACCGATTTGAGGTCGTATGCATCAAAGGTTCGTAACAAAGCTTCATATATCTTGCAAAGCTCCTTTGACGAGTAG 3282 41.22 MIAAAGSSSNGGIGSGELANFVRQVVVGRWFSLFASFLVMTGAGGVYLFAYYSRDIKKTLQCDQTTLNKIGFYKDLGSNVGVIAGLLAEVAPTWLVLLIGAAFNFLGYFKIWQAVTGKIVQPTVAFFCFYMMVGANSQNFANTGVLVTCVKNFPERRGVMLGLLKGFVGLSGAIMTQLYIAIYGHDTKSLVLLIAWFPSIISLIFVYTIREIKAVKHPNEFRVFVQFLCVTVLLAIFLTVLVFVQKRVRFHQSAHIAIVSAILALLFVPLLIAIREELLLWNLNKRTIPTNPFTRIRIENNPQTTTTPIPSSNQTQFSSCFANIFNKPERGEDYTVLQAIFSIDMLILCSAMLIGVGASLTAIDNLGQIGESQGYPSETINSFISLVSIFNFTGRIFSGFVSEILLEKFKFPRPLMLTLILLISCIGHLLVAFPFEDSLFVASIIIGFSMGSQVPLHFAMISEIFGLKHYSTLFNFGQLSCPIGSYILNVMVTGKMYDKVAQLGSNPNKFHCAGSHCYEQSFLILGGLTFIVAMISLVLVMRTRDFYRGDIYKKFREDMESLKTEVEFYKVNEKRTRIGNLLVDKHTINFKSEPFSNCTHPETSLCPLLASILALFFQNSVAVTENPKRENNCLKSMEMDGPLDFESKDPLLSSPVTLKKRKKIIGLDDLLTDHYKDKCKLVEKESKQAKKKKNYDSDDDDFGKEAVVSQVVDECQNKMNQLGGEEDTSIWGLNVFGEQRPPPALQSHELESCHFLQTFLNNEVNSLVNLTVEKGDAFLEGLLVNGWLSTLVSLTGRAEKSLAIWTFNLMLYSSREDLRTSACDFWRDVMLTTNEVEQQHLQIDWIPNYAQLGEALESYGYRFECSLNPGFVHTGSGRGGPPQNIRAWIKFITICCQTKIKYNIFTSSEVERLAEAIICLFLDRQFQGITMLLCECLQSLINYFTDEEWKACCENIAKSLVCRIPMDLNCLRAVECISGVDLRSKYLRSTIAYQILLICFENEATNEEEVLRVLTSITVKDKSCDLFKLYIYLVLTENWLVGSRMLEGKPLICEMWGLFLRNCSCQIASTDLRSYASKVRNKASYILQSSFDE 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2950844 2962370 - ClG42_03g0025400.10 Clacu03g0254 244819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0254 1093 Gene3D MFS general substrate transporter like domains 337 546 IPR036259 -
Clacu03g0254 1093 PANTHER ACTIN PROTEIN 2/3 COMPLEX SUBUNIT-LIKE PROTEIN 637 1092 - -
Clacu03g0254 1093 SUPERFAMILY MFS general substrate transporter 33 270 IPR036259 -
Clacu03g0254 1093 Pfam Nodulin-like 29 274 IPR010658 -
Clacu03g0254 1093 CDD MFS_Mch1p_like 28 533 - -
Clacu03g0254 1093 SUPERFAMILY MFS general substrate transporter 247 545 IPR036259 -
Clacu03g0254 1093 Coils Coil 552 572 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0254 Clacu-Chr3:2950844 Clacu03g0266 Clacu-Chr3:3026229 6.90E-176 dispersed
Clacu03g0254 Clacu-Chr3:2950844 Clacu03g0256 Clacu-Chr3:2971169 2.30E-78 proximal
Clacu03g0254 Clacu-Chr3:2950844 Clacu03g0257 Clacu-Chr3:2975248 1.40E-91 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0254 - - - 0.0