Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0261 ATGGATTCAGAAGTATGGGCATTTACAAAACAAGTTTTAGCAGGACGATGGTTTTCGGTATTCGCCGGCTTAATAATGATGCTTGGCAATGGCTCCACTTACATCTATGGAACATATTCAAAAGTCATCAAGACCCGATTTGATTATAGCCAAACCCAAATTAACATATTAGGATTTGCTAAAGATCTCGGCTCCAATGTCGGTATTTTCGCGGGTCTTCTAGCCGAGGTGGCTCCGCCGTGGGTTCTCTTCGTACTCGGTGCTGCCCAGAACTTCGCTGGGTTCTTCTTGATATGGCTGGCCATCACACACCGTATCCCTCAACCAAAATTCTGGCAAATGTTCCTTTTCGTTTGCTTTGGTACTAATTCTTCAAATTTTGGAAATACAGCCATTATGGTGGCTAGTGTAAGAAACTTCCCTGACCGTCGTGGTATCATTTTGGGGTTGCTGAAAGGGTTTGTTGGTATTGGTGGTGCTGTTTATACCCAAATATATTTAGGTCTTTACGGCCATGAAGATCCAGCTAATCTTGTTCTTCTTTTTGCTTGGCTTCCCTCTACAGTAATCCTAATTCTTTTCCCATCAATTCGATCAATCCGTATCCGTAAACATCCTGAAGAACTCAAAGTGTTTTACCATTTACTTTACGTCTCTATCGTTATAGCTCTGTTCATCCTGTTTTTAACCCTTGCACAGAAAGAAGTTGTTTTCTCTCAAGCTGGGTATGGGAGTGGAGCAACCGTGGTAGTTGCGTTACTATTCCTACCCCTTTTAATCACATGTAGAGAAGAATTCTTATTGTACAGACTCAACAAACGAAACGATGACGCTTCGGTTACTCTATCCGTCAATGAGCAAAAGCCTCCCACCGTAATCACAACAGAGAAAACAGAGATTTCGGGGTCGTGTTTGTCAAGAGTATGGAATAAACCTGAAAGAGGGGAAGATTTCACCATCTTGCAAGCTATCTTCAGTATAGATATGGCTCTTATTTATCTAGCTACTTTTTCTGGTTCTGGTTCTTCTCTTGCAGCCATTGATAATTTGGGCCAGATTGGTGAATCACTTGGCTACCCACCACGAGCGATAAGCATCTTCGTTTCTTGGGTTTCCGTATTCAATTTCTTCGGCCGAGTCTTCTCCGGTTTCATCTCGGAAACTATGATGACTAAATACAAATTACCTCGTCCTCTATTATTTTCTTTTGCCTTTCTCATCACTTGCATTGGCCAGCTTATCATCGCGTATCCCACTCGGGGTTCGGTCTACCTTGCTTCCATGATTATCGGGTTCGGGTTCGGAACTCAAGTGCCATTGCTATTCTCCATAATCTCTGAGATTTTTGGGCTAAAACATTACTCCACATTGTTCAATTTTGGGCAATTGGTAGTCCCAATTGGGTCTTATTTACTAAACGTGGATGTTGTAGGCAGGTTGTACGATAAGGAAGCATTACATGAAGGTAGAAAGATGACGGGCAAGGGGATAACTTGCACCGGAGCTCATTGCTTTAGTGGATCTTTCACTACTTTGGCTGCAGCGACATTGTTTGCAGCTTTGATTATGCTTGTGTTGGCTTATAGGACTCGAGAATTCTACAATGGAGATGTATACAAGAAATACAGAGAGGATATATGGATTTCGCAAACCGAAATAGAGTTCTATCGCGTAGACAAAAAGACACTTGACGACTAA 1698 42.17 MDSEVWAFTKQVLAGRWFSVFAGLIMMLGNGSTYIYGTYSKVIKTRFDYSQTQINILGFAKDLGSNVGIFAGLLAEVAPPWVLFVLGAAQNFAGFFLIWLAITHRIPQPKFWQMFLFVCFGTNSSNFGNTAIMVASVRNFPDRRGIILGLLKGFVGIGGAVYTQIYLGLYGHEDPANLVLLFAWLPSTVILILFPSIRSIRIRKHPEELKVFYHLLYVSIVIALFILFLTLAQKEVVFSQAGYGSGATVVVALLFLPLLITCREEFLLYRLNKRNDDASVTLSVNEQKPPTVITTEKTEISGSCLSRVWNKPERGEDFTILQAIFSIDMALIYLATFSGSGSSLAAIDNLGQIGESLGYPPRAISIFVSWVSVFNFFGRVFSGFISETMMTKYKLPRPLLFSFAFLITCIGQLIIAYPTRGSVYLASMIIGFGFGTQVPLLFSIISEIFGLKHYSTLFNFGQLVVPIGSYLLNVDVVGRLYDKEALHEGRKMTGKGITCTGAHCFSGSFTTLAAATLFAALIMLVLAYRTREFYNGDVYKKYREDIWISQTEIEFYRVDKKTLDD 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2996954 2998651 + ClG42_03g0026100.10 Clacu03g0261 244826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0261 565 Gene3D MFS general substrate transporter like domains 14 282 IPR036259 -
Clacu03g0261 565 Gene3D MFS general substrate transporter like domains 316 535 IPR036259 -
Clacu03g0261 565 SUPERFAMILY MFS general substrate transporter 16 532 IPR036259 -
Clacu03g0261 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 15 543 - GO:0016020(PANTHER)
Clacu03g0261 565 Pfam Nodulin-like 16 261 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0261 Clacu-Chr3:2996954 Clacu03g0263 Clacu-Chr3:3006421 1.10E-214 dispersed
Clacu03g0261 Clacu-Chr3:2996954 Clacu03g0262 Clacu-Chr3:3001182 7.00E-257 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0261 - - - 0.0