Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0262 ATGGGATCAGAAGCCTGGGCTTTCACCAAACAAGTCATAGAAGGACGATGGTTTTCAGTATTCGCCGGAATGATGATGATGATCGGCAATGGTTCAACATACATTTATGGAACATACTCCAAAGTCGTCAAGGCCGAATTTAATTACAGCCAAACCCAAATTAACACATTAGGATTCGCCAAAGATCTCGGTTCCAACGCCGGAATTTTCGCCGGCCTTCTCTCCGAGGTGGTTCCCACGTGGGTTCTCTTCATGATTGGTGCTGCCCAAAACTTCACTGGCTACTTCTTCATATGGCTGGCCATCACACGTCGTATCCCTCAACCAAAATTCTGGCAGATGTTCCTTTTCGTTTGTTTTGGAACTAATTCTTCTAATTTTTCCAATACAGGAATTATGGTCCATAGCGTCAGAAACTTCCCTGACCGTCGTGGTATCATTTTAGGGTTGCTTAAAGGGTATGTTGGTATTGGAGGTGCTATTTTAACCCAAGTTTATTTAGGAATTTATGGCCCTGAAGACCCATCAAATCTTGTTCTTCTTTTTGCTTGGTTTCCCACTACAGTAATTCTCCTTCTTTTCACCTCCATTCGACCAATTCGTATTCGTAAACATCCCGAAGAACTCAAAGTTTTTTACCATTTACTTTACGTCTCTGTTGTTCTAGCAATTTTCATCTTGTTTTTGACTATTACACAAAAAGAAGTGGTTTTCTCTCAAGCTGCGTATGTGAGTGGCGCGTCCGTCGTCGTTACCTTACTCTTTTTACCCCTTTTGATCGCTTGTAGAGAAGAATTCTTGTTGTACAAACTCAAGAAACAAAACTTTAACCTTGATCCTTCTGTTGCTCTATCCATTGTTGAACCAAAGATTTCTTCTCAAACCACCACTAACAAATCATTTCCCACATTAGAGGAAGTAGCAGAGATTTCGCCCACCACGTGTTTCGGAAACATATGCAACAAACCAGAACGAGGCGAAGATTTCACCATCTTGCAAGCCATCTTTAGCAAAGATATGGCTCTTATTTCTTTAGCTACTTTTTCTGGATGTGGGTCTTCTCTTGCAGCCATTGATAATTTAGGCCAAATTGGTGAATCACTTGGCTATCCACCACGAGCTATAAGCATATTGGTTTCATGGGTTTCCATATTCAATTTCTTTGGCAGAGTCTTCTCAGGTTTCATCTCCGAAAACTTGATTATCAAATACAGATTACCTCGTCCTTTAACATTTGCTTTTGCCTTTCTTCTCACTTGCATTGGCCAGCTTTGCATCGCGTATCCATTTCCGGGTTCGGTCTACGTCGCTTCGATTGTTATCGGGTTCGGATTTGGAGCTCAAAATCCATTACTATTCGCGGTAATCTCAGAGATGTTTGGACTAAAACATTACGCCATATTGTTCAATTGTGGGCAATTGGTAGTCCCAATAGGGTCTTATATACTAAATGTGGATATAGTTGGGAAATTGTATGATAGAGAAGCTTTACGTGAAGGTAGAAAGATGACGGGCAAGGGGATAACTTGCACCGGAGCTCATTGTTTTAGTGGATCTTTCACAATTTTGGCTGCAGTGACATTGTTTGGAGCTTTGGTTATGCTTGTGTTGGCTTATAGGGCACGAGAATACTATAAATGGGATGTATATAAGAATTGCCGAGAGGATATATGGATTCCCCAAGAAGAAATGGAGTTCTATCGCTTAGACAACAGGAAGAACATTGATGACTAA 1734 41.06 MGSEAWAFTKQVIEGRWFSVFAGMMMMIGNGSTYIYGTYSKVVKAEFNYSQTQINTLGFAKDLGSNAGIFAGLLSEVVPTWVLFMIGAAQNFTGYFFIWLAITRRIPQPKFWQMFLFVCFGTNSSNFSNTGIMVHSVRNFPDRRGIILGLLKGYVGIGGAILTQVYLGIYGPEDPSNLVLLFAWFPTTVILLLFTSIRPIRIRKHPEELKVFYHLLYVSVVLAIFILFLTITQKEVVFSQAAYVSGASVVVTLLFLPLLIACREEFLLYKLKKQNFNLDPSVALSIVEPKISSQTTTNKSFPTLEEVAEISPTTCFGNICNKPERGEDFTILQAIFSKDMALISLATFSGCGSSLAAIDNLGQIGESLGYPPRAISILVSWVSIFNFFGRVFSGFISENLIIKYRLPRPLTFAFAFLLTCIGQLCIAYPFPGSVYVASIVIGFGFGAQNPLLFAVISEMFGLKHYAILFNCGQLVVPIGSYILNVDIVGKLYDREALREGRKMTGKGITCTGAHCFSGSFTILAAVTLFGALVMLVLAYRAREYYKWDVYKNCREDIWIPQEEMEFYRLDNRKNIDD 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3001182 3002915 - ClG42_03g0026200.10 Clacu03g0262 244827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0262 577 Gene3D MFS general substrate transporter like domains 340 571 IPR036259 -
Clacu03g0262 577 SUPERFAMILY MFS general substrate transporter 16 542 IPR036259 -
Clacu03g0262 577 Pfam Major Facilitator Superfamily 347 540 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu03g0262 577 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 15 552 - GO:0016020(PANTHER)
Clacu03g0262 577 Pfam Nodulin-like 16 261 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0262 Clacu-Chr3:3001182 Clacu03g0264 Clacu-Chr3:3012351 3.60E-200 dispersed
Clacu03g0261 Clacu-Chr3:2996954 Clacu03g0262 Clacu-Chr3:3001182 7.00E-257 tandem
Clacu03g0262 Clacu-Chr3:3001182 Clacu03g0263 Clacu-Chr3:3006421 1.80E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0262 - - - 0.0