Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0266 ATGGGTACAACCACCGGACCCGACGGTCCCCACGGCTACACAGCACTCCGATTCTCCTTGCAGGTCATTAAAGGACGGTGGTTCACCGTGTTCGCTACATTTCTGATCATGGCCGGCGCCGGCGCAACCTATCTCTTCGGTGTCTACTCCAAACAGATCAAAGCGACGCTTGGATATGACCAAACCACTTTGAATCTGATGGGTTTTTCTAAAGATCTGGGTGCTAATGTCGGTGTGCTGTCCGGTTTAGTGGCGGAGGTCACGCCGACTTGGTTCGTTCTCCTCCTTGGCTCCGCCTTGAACTTCACCGGATACTTCATGATTTGGCTTGCGGTTACCGGCAGAATTGCAAAGCCTCAAGTCTGGCAGATGTGTCTTTACATTTGCATTGGAGCGAATTCCCAGAATTTTGCTAATACTGGCGCTTTGGTTACTTGCATCCAGAATTTCCCCGAGAGCCGTGGAGCTATGATGGGGCTTTTGAAGGGCTTCACAGGGCTGAGCGGCGCCATTCTCACACAGATTTATTTGGCCGTCTATGGCGATGATGCCACGGCGTTGATCCTTCTAATTGGGTGGCTCCCGGCGGCGCTCTCCGTCGTTTTTGTTTTCACGATTCGGAGGCTCAGAGCAGAGAGACAACCGAACGAGAAGAGGGTTTTTTACCATTTCCTTTATGTCTCAATCGGGTTAGCGCTTTTCATCATGCTTATGAATATTGTTCAGAAGAAAGTGGAATTCAATCATACGGCTTATGCTATGAGTGCTACTGTGGTTTGCGTATTTCTTTTCCTTCCTCTCTTGATTGTGATCCGGGAAGAGCTTCATCTCTGGAATGCAATGAAAAACCCCCCAATTCCCAACGAAAAGCCACAATCAAAATCTCAACCAAAACCAATTGATGAACCCAAAATCATCACCGAAGAATCAAAAGAAATCAAGGAAATCACAAACCCACCACCAGCGTCCTGTTTCTCCAACATTTGTCACAAACCAGCCAGAGGAGACGATTACACAATTCTCCAAGCACTTCTCAGCGTGGATATGTTGGTTCTCTTCATCGCAACATTCTGTGGATTAGGCACAAGCTTAACCGCAGTAGACAATTTAGGGCAAATCGGTGAATCACTCGGCTACCCATTAAAAACAGTAAAATCATTCGTTTCATTAGTAAGCATTTGGAATTACTTCGGCAGAGTATTCTCTGGATTCGTCTCTGAAACCCTTCTCGCAAAATTCAAATTCCCAAGACCTTTAATGATGACATTAGTCCTTCTTCTCTCTTGCATTGGCCAACTCTTAATCGCATTTCCAGTGCCAGGCTCCGTATACATAGCCTCCGTCATCATCGGATTCTCCTTCGGCGCACAACTTCCCCTGCTTTTCGCCATAATTTCAGAGCTATTCGGACTGAAATATTTCTCCACTTTGTTCAATTGTGGGCAAATCGCGAGCCCGTTAGGATCGTATATTCTGAATGTGAAGGTCGCTGGAATGATGTACGACATGGAAGCTTTAAAGCAGCTGAAGGAGAAGGGGTTAGACAGATCGGCGGTGAAGGAATTGACTTGCATTGGAAAGCAATGTTTCAGGAAATCGTTTACGTTAATGGCGATTGTTACCTTTGTTGGAGCTATGGTTTCACTGGTTTTAGTGATGAGAACAAGGGAGTTTTACAAAGGGGATATTTACAAGAAATTTAGAGACGAAGAACTGAAGGAGGAAACCACCGGAGCAGAGGTTACTGCTCGGGAATCCAAGTAA 1764 46.2 MGTTTGPDGPHGYTALRFSLQVIKGRWFTVFATFLIMAGAGATYLFGVYSKQIKATLGYDQTTLNLMGFSKDLGANVGVLSGLVAEVTPTWFVLLLGSALNFTGYFMIWLAVTGRIAKPQVWQMCLYICIGANSQNFANTGALVTCIQNFPESRGAMMGLLKGFTGLSGAILTQIYLAVYGDDATALILLIGWLPAALSVVFVFTIRRLRAERQPNEKRVFYHFLYVSIGLALFIMLMNIVQKKVEFNHTAYAMSATVVCVFLFLPLLIVIREELHLWNAMKNPPIPNEKPQSKSQPKPIDEPKIITEESKEIKEITNPPPASCFSNICHKPARGDDYTILQALLSVDMLVLFIATFCGLGTSLTAVDNLGQIGESLGYPLKTVKSFVSLVSIWNYFGRVFSGFVSETLLAKFKFPRPLMMTLVLLLSCIGQLLIAFPVPGSVYIASVIIGFSFGAQLPLLFAIISELFGLKYFSTLFNCGQIASPLGSYILNVKVAGMMYDMEALKQLKEKGLDRSAVKELTCIGKQCFRKSFTLMAIVTFVGAMVSLVLVMRTREFYKGDIYKKFRDEELKEETTGAEVTARESK 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3026229 3027992 - ClG42_03g0026600.10 Clacu03g0266 244831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0266 587 SUPERFAMILY MFS general substrate transporter 26 557 IPR036259 -
Clacu03g0266 587 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 25 568 - GO:0016020(PANTHER)
Clacu03g0266 587 FunFam Nodulin family protein 340 561 - -
Clacu03g0266 587 CDD MFS_Mch1p_like 25 545 - -
Clacu03g0266 587 Gene3D MFS general substrate transporter like domains 344 560 IPR036259 -
Clacu03g0266 587 Pfam Nodulin-like 26 271 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0254 Clacu-Chr3:2950844 Clacu03g0266 Clacu-Chr3:3026229 6.90E-176 dispersed
Clacu03g0256 Clacu-Chr3:2971169 Clacu03g0266 Clacu-Chr3:3026229 1.80E-56 dispersed
Clacu03g0257 Clacu-Chr3:2975248 Clacu03g0266 Clacu-Chr3:3026229 3.60E-68 dispersed
Clacu03g0264 Clacu-Chr3:3012351 Clacu03g0266 Clacu-Chr3:3026229 2.60E-158 dispersed
Clacu03g0266 Clacu-Chr3:3026229 Clacu05g2320 Clacu-Chr5:31550671 1.50E-193 dispersed
Clacu03g0265 Clacu-Chr3:3018251 Clacu03g0266 Clacu-Chr3:3026229 1.60E-152 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0266 - - - 0.0