Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0272 ATGGGAGATGTAGAAGGTTCCCCAGGAAGCTCTATGCATGGGGTGACCGGAAGAGAGCAAAGTTTTGCATTTTCCGTAGCTTCCCCAATTGTCCCAACGGACACAACCGCGAAATTTGCATTACCCGTTGACTCTGAGCACAAAGCGAAGGTTTTCAAGGTGTGGTCTTTAGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTTACATGCTTCGTCTCCACATTCGCAGCCGCCCCTCTGGTCCCCATCATTCGAGACAATCTCAACCTCACCAAAGTTGACATCGGTAACGCCGGAGTCACCTCCGTGTCTGGCAGTATCTTCTCTCGTCTTGTAATGGGGGCTGTGTGTGACCTTCTGGGGCCACGCTATGGGTGTGCCTTTCTCATTATGCTCTCCGCCCCCACCGTGTTTTGTATGTCCTTTGTGTCCAACGCTGCTGGGTATATAGCTGTGAGATTCATGATTGGCTTCTCGCTTGCCACCTTCGTCTCCTGCCAGTATTGGATGAGCACCATGTTCAACAGTCAGATCATTGGGCTTGTGAATGGGACTGCTGCTGGGTGGGGGAATATGGGCGGAGGAGCCACTCAGCTCATCATGCCTTTGTTGTACGATGTCATTCAGAGAGCTGGCGCTACTCCTTTCACTGCTTGGAGGATTGCCTTCTTTATCCCTGGTTCCCTTCATATTCTCATGGGCATTTTGGTCTTAACTCTTGGCCAGGACTTGCCTGATGGTAACCTTACCAGTCTTCAGAAGAAGGGCAATGTTGCCAAAGATAAATTCTCCAATATCCTGTGGTACGCTGTCACCAATTACCGAACTTGGATCTTCGTCCTCCTCTATGGCTACTCCATGGGCGTCGAACTTTCCACCGATAACGTCATTGCCGAATACTTCTACGACAGGTTTGATCTAAAGCTACACACGGCAGGAATTATCGCAGCAACGTTCGGGATGGCGAATCTAGTGGCTCGACCGTTCGGGGGGTATGCATCGGACGTGGCAGCGCGGTACTTCGGGATGAGAGGAAGGCTGTGGACTTTGTGGATCCTACAAACATGTGGGGGAGTGTTTTGCATGTGGCTTGGGAAAGCAAACAAACTGCCAACAGCAATAGTTGCAATGATATTGTTCTCAATAGGAGCACAGGCTGCATGTGGAGCAACATTTGGGATCATTCCCTTCATTTCTCGACGGTCTTTAGGAATTATATCAGGACTGACAGGAGCAGGAGGAAACTTTGGAAGTGGTTTGACACAATTAGTGTTCTTCTCAACCACCAAATACTCAACAGACACAGGCTTGTTCTTGATGGGAATAATGATTGTATGTTGCACTTTACCAGTCAGTTTGGTTCATTTCCCTCAATGGGGAAGCATGTTTTTACCTCCCACGAAACATGTTGAAAAATCCACTGAGGAATTTTATTATGGTTCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCATCAACAAAGCATTAAGTTTGCTGAGAATAGCAGATCTGAACGTGGTAGGCGTGTGGCTTCAGCTCCAACTCCACCAAATACAACTCCTTCCCATGTTTAA 1593 48.15 MGDVEGSPGSSMHGVTGREQSFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKVWSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSNAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDVIQRAGATPFTAWRIAFFIPGSLHILMGILVLTLGQDLPDGNLTSLQKKGNVAKDKFSNILWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDVAARYFGMRGRLWTLWILQTCGGVFCMWLGKANKLPTAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDTGLFLMGIMIVCCTLPVSLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPTPPNTTPSHV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3117082 3119065 - ClG42_03g0027200.10 Clacu03g0272 244837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0272 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 7 515 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Clacu03g0272 530 SUPERFAMILY MFS general substrate transporter 58 459 IPR036259 -
Clacu03g0272 530 Gene3D MFS general substrate transporter like domains 264 464 IPR036259 -
Clacu03g0272 530 FunFam High affinity nitrate transporter 57 254 - -
Clacu03g0272 530 FunFam Nitrate transporter 2.1 265 466 - -
Clacu03g0272 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu03g0272 530 MobiDBLite consensus disorder prediction 490 513 - -
Clacu03g0272 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112(InterPro)
Clacu03g0272 530 Gene3D MFS general substrate transporter like domains 58 254 IPR036259 -
Clacu03g0272 530 MobiDBLite consensus disorder prediction 490 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0272 Clacu-Chr3:3117082 Clacu05g2751 Clacu-Chr5:34960451 1.40E-174 dispersed
Clacu03g0271 Clacu-Chr3:3104179 Clacu03g0272 Clacu-Chr3:3117082 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0272 K02575 - csv:101218006 1046.57