Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0282 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCTTTACGGCCTCCGCTCGTCTTTCCTAAAGATCCCAATCTCTCGATGATCTCTTTCCTCTTCCGAAATTCGTGTTCTTATCCAAATAGACTAGCCATTGTGGATGCGGAATCTTCTGATTCTGTGTCGTATTCACAACTTAAAGCCTCTGCAATTAGGGTCTCCAATGGGTTGATCCAATTGGGTATCGAGAAAAACGACGTGGTGTTGATTTTTGCTCCAAATTCAGTTCAGTTTTCCGTTTGTTTCATTGGGATTATTGCTATTGGGGCTATTGTAACCACTTGTAATCCTGTCTACACGGTGTCTGAGCTAACCAAGCAAGTTAAAGATGCTAAACCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAAGGATCTAAACATCCCAACTGTGTTACTGGACCAGCAGATTCCTTCAGCAATTCACTCTTCCAAAATATTATGTTTCAATGATTTGATGAACATGGCTGGTGATAAATCTGGGTCTGAGTTCCCAATTGTTGGGGTGAAACAGAGTGACACAGCTGCACTTCTGTATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTCTGACTCATAGAAACTTCATAACGTCTTCATTGATGATTACAATGGATCAGACGTTTAGGGGAGAGGAACATGGCGTATATCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCGCAGCTGCAGAAAGGAAACAGCATTGTCTCTATGCCAAAGTTTAACCTGGAGAAGGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATATGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTAGCAAAGCAGAGTGTGGTGAAGAAGTACAACCTTTCATCTGTGAAGCGTGTTGGTTCTGGGGCTGCACCTCTTGGGAAGGAATTAATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTCTCCAGGGCTATGGTATGACTGAGACTTGTGGAGTCGTTGCTTTGGAGAATCCAGAAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTGGAGGCTAAAATAGTCAGTGTAGATACTTTGAAGCCTCTACCTCCTAATCAATATGGAGAGATACATGTTCGGGGACCAAACATGATGCGGGGTTATTTCAACAATCCAGAAGCCACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCTCCAGCTGAGCTTGAAGCACTGTTGGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTACCCCGATGCTGAAGCTGGAGAAGTTCCAATCGCATATGTTGTTCGATCTGCCAATAGTTCTTTGACCGAAGAGGACATCCTTAAATTCATTGCTGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTTCCCAAGTCTGTTTCTGGGAAAATCCTCAGGAGAGAACTCATTGAAAAAGTAAGAGCTAAAATTTAA 1632 43.26 MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNSCSYPNRLAIVDAESSDSVSYSQLKASAIRVSNGLIQLGIEKNDVVLIFAPNSVQFSVCFIGIIAIGAIVTTCNPVYTVSELTKQVKDAKPKLVISVAELWDKVKDLNIPTVLLDQQIPSAIHSSKILCFNDLMNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFITSSLMITMDQTFRGEEHGVYLNFLPMFHVFGLACITYAQLQKGNSIVSMPKFNLEKALWAVEKYKVTDMWVVPPVVLALAKQSVVKKYNLSSVKRVGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGVVALENPEVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMRGYFNNPEATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSANSSLTEEDILKFIADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3258102 3260785 - ClG42_03g0028200.10 Clacu03g0282 244847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0282 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 440 - -
Clacu03g0282 543 Gene3D - 10 440 IPR042099 -
Clacu03g0282 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 535 - GO:0016405(PANTHER)
Clacu03g0282 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Clacu03g0282 543 Gene3D - 441 542 IPR045851 -
Clacu03g0282 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Clacu03g0282 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Clacu03g0282 543 CDD 4CL 21 535 - -
Clacu03g0282 543 Pfam AMP-binding enzyme 39 403 IPR000873 -
Clacu03g0282 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0456 Clacu-Chr1:4516992 Clacu03g0282 Clacu-Chr3:3258102 4.30E-51 dispersed
Clacu03g0282 Clacu-Chr3:3258102 Clacu10g1982 Clacu-Chr10:33338508 5.20E-193 dispersed
Clacu03g0282 Clacu-Chr3:3258102 Clacu11g1447 Clacu-Chr11:25488769 2.60E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0282 K01904 - csv:101220141 1009.98