Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0294 ATGAGAGCTATCATATTGAATTCAGATTTGAGATCAGTTTTACGTCCAAACGTCAGCTTCAACTTGCTTCCCGGCTCTGATGAAATGATCAATTTCTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAATTGGAAGACCCAGCTCAATCCAGTAGACAAATTGTGACAGATGCCTCTGGTGGAATTGTAAGTAATAGTGTTGATTATTGGAAAAGCTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAATAATCCATCCAACGAGACATTCAATCAGGATGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCCATTCGAACTCAGGGCCTGGAAATGGCATCCATTGTGCAGCATAATTTCACTGAAATTAACCAGACTGCTGCTTGTGAAGGCAGTGGGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGTCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGAAAAACCGATGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCCCTGTCGCTGTCTTCGAATCCCCCGTCTAAATTGCCCACCACACAGTTCGTAGAATCAGAGGAATTACAGGAAAGTATCACTGTGTTAAAAAATACCCAAGAATCCAAAACAGTCAAATCTGAGAATTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTCAATCCATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGTTGTTAGATGAATTTTGTGGCTCAAGTGGTCATTATAAGTTTTTCCAACCATGTGAGGTATTTGAGAAGACACCTGGGGAAGTTGGTGTCTCAGCGGCCCTTAATGCATTTAGAAATGAGGCTGTTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTGAAGAATGCCATCTCGGAGCAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCCTCTGCTGGGACAAGCGGCAGCAAAGGTGGTGATGCAAATTCGGTTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTTGAATCCCAAAATGCATGGAGGCCACAGAGAGGGTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGTCTATCTCGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGCCATGGTATGAGAGATGGAAGTTCTACATTAGAGAAGACTGCCGGTTGGACCAGTAGTGAACGCCAGCCTCTAAAAAACCATGGTGTTACAAATGAAATGGCTAGTCATCATTTGCAGTGCTTTGGGGTAGATTCCTTAAGTGGCGACAGAAATGGACTCGGCTGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAACTGATGGGGTTCATGCCATATCAAGCCAGTGCAGCTGAGGTTGGAGGACTTGGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTTGAGAGTGCCCACCATGAACAGGAGCGGCATCAAATGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGAAAAGTTGGATTCTTAAATGAAGGAGCCCAAGTCGCTGTTCGAGGGTTCAGAAAGTTGAAACAGCTCTCGGCAATCTCTCCATATCTCAGAGCATTCTACAATGAGCAGAGACGCATTGGTGATAACTTCAGCGGCTATAATGAATATATTCTCTTCGGCTTTTCTATTCTAAGACATGTTATTTAG 2517 43.31 MRAIILNSDLRSVLRPNVSFNLLPGSDEMINFSRDSNVLSHQRDMMLRQELEDPAQSSRQIVTDASGGIVSNSVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMASIVQHNFTEINQTAACEGSGNELALLPVYRDQSNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFVESEELQESITVLKNTQESKTVKSENLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSSGHYKFFQPCEVFEKTPGEVGVSAALNAFRNEAVKENSSCADASTFCGSNESNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGGDANSVRLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGMRDGSSTLEKTAGWTSSERQPLKNHGVTNEMASHHLQCFGVDSLSGDRNGLGCSDQQWDQGKQSKLDNGVQSNMEGELMGFMPYQASAAEVGGLGAVSLTLGLRHRVESAHHEQERHQMQQQDDQLIRHYGSEMIHDFVGKVGFLNEGAQVAVRGFRKLKQLSAISPYLRAFYNEQRRIGDNFSGYNEYILFGFSILRHVI 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3443229 3449168 + ClG42_03g0029400.10 Clacu03g0294 244859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0294 838 Gene3D - 558 620 - -
Clacu03g0294 838 ProSiteProfiles 'Homeobox' domain profile. 552 615 IPR001356 GO:0003677(InterPro)
Clacu03g0294 838 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 296 646 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu03g0294 838 Pfam Associated with HOX 342 495 IPR006563 -
Clacu03g0294 838 FunFam BEL1-like homeodomain protein 9 558 620 - -
Clacu03g0294 838 SMART HOX_1 555 619 IPR001356 GO:0003677(InterPro)
Clacu03g0294 838 CDD homeodomain 555 616 IPR001356 GO:0003677(InterPro)
Clacu03g0294 838 Pfam Homeobox KN domain 572 611 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu03g0294 838 SUPERFAMILY Homeodomain-like 556 621 IPR009057 -
Clacu03g0294 838 MobiDBLite consensus disorder prediction 247 267 - -
Clacu03g0294 838 SMART prehox3 337 496 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0294 Clacu-Chr3:3443229 Clacu11g0554 Clacu-Chr11:5221210 1.90E-61 dispersed
Clacu03g0294 Clacu-Chr3:3443229 Clacu10g2121 Clacu-Chr10:34445374 7.90E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47382 PF07526 POX 1.10E-42 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0294 - - - 0.0