Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0309 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAGTTCGTCGAGATTGATCCTACTGGTCGATATGGAAGGTATAAAGAAATTTTGGGCAAAGGGGCATTCAAAAGGGTATATCGGGCTTTTGATGAGTTGGAAGGGATTGAAGTAGCTTGGAATCAGGTTAAGGTAACGGATCTATTGCGAAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAGAACATTAACTTCATTACTGAGATATTTACTTCAGGGACACTACGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCATTGAAAAAGTGGTCCAGGCAGATATTAGAGGGCCTTCTATATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTAAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCCGCCATTCTTCAACAAGCTCGTTCAGCCCACAGTGTCATTGGGACACCCGAATTTATGGCTCCGGAGCTGTATGAGGAGGAATACAATGAGCTTGTGGATATTTATGCCTTTGGAATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATTAAGCCAGCTTCATTGGCAAAAGTCACTGATTTAGGAGTGAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTGATCGTTTACCTGCAAAAGATCTTTTAAAAGATCCATTTCTCCAAGCTGATGATGATCATGAAAGTGCATCTCGTCATTTACAATCAAAGACCCTTCATGCAGGAAAAAGAGAACAAATTGATTTTGATCGAAGTGTAGATGATACTTCTGTTGAGACAAGCAGAGATTTCAGTATGCATGGCGAGAGGAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCTGATTCCATGGGTAATTATCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACAGCAATTTCTGTTGCTAGTGAAATGGTAGAGGAGTTAGACCTTTCTGATCAAGATGTCTCCACAATTTCGGAAATGATTGAAACAGAAATTCGATCTTACATTCCAGATTGGATATCAGTTGAGTACTCTGGAGATAATGTAGGTGCTGATGTTGCAATTTCTGATAGCTCTCCTTCTGAAACAAGGAATGCTGCCTCTCCATTGTCTATGGAATCTGGTAATCTTGCATTAGAGGTTATGCCTTCAGGTCGCAAGTATTGGTCAGACTCTCCAAAGGGAATTGGTGGATGTTCTCCTATTAAGCCAGGTCCTTCAAACTTGTCTTTTACCTTAGATCAAAATGTTGAATCCTCCAACACCCCCATACATGGGGACAATCTAGACCATGCTGCCATAATTAAGGGATTGGAAAGTGAGCTTTTGTTAGAGGGCGGTGATCATGATGGACAGGATGAGGATAAATCAACTACAAATATTCATGCTAGCTCTGAAGCACATCTTTTAGAAGAGAACAATTATGATGAATCAGTTGACCTTGAAATAATAGCTGAGAAACTTGAAATTTTGTTGACACAACAACAGAAAGAATTAGATGAACTAAAGAAAAAGCATAAATTAGCTATTTCAGAACTTTTGACTAAACTTGCACCTGAGTCCTATCAGAAGTCAATTGATCCAGTTATGAAGCATGATGATGAAGATGGTAAGGAGGAGTGGCCAATTGATGGATTGCAAAGCTATAAACTGATATCGGCATCCCTTCCTGGTGATGGGACTGATCAAACTTGTAAAGAATATATATAG 1905 38.48 MSQDLSLDQDLDESDPEFVEIDPTGRYGRYKEILGKGAFKRVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDLGVKAFIEKCIANVSDRLPAKDLLKDPFLQADDDHESASRHLQSKTLHAGKREQIDFDRSVDDTSVETSRDFSMHGERKDVNKIFLKLRIADSMGNYRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWISVEYSGDNVGADVAISDSSPSETRNAASPLSMESGNLALEVMPSGRKYWSDSPKGIGGCSPIKPGPSNLSFTLDQNVESSNTPIHGDNLDHAAIIKGLESELLLEGGDHDGQDEDKSTTNIHASSEAHLLEENNYDESVDLEIIAEKLEILLTQQQKELDELKKKHKLAISELLTKLAPESYQKSIDPVMKHDDEDGKEEWPIDGLQSYKLISASLPGDGTDQTCKEYI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3611049 3615492 - ClG42_03g0030900.10 Clacu03g0309 244874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0309 634 CDD STKc_WNK 26 286 - -
Clacu03g0309 634 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
Clacu03g0309 634 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Clacu03g0309 634 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Clacu03g0309 634 Coils Coil 550 577 - -
Clacu03g0309 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0309 634 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Clacu03g0309 634 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 575 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu03g0309 634 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Clacu03g0309 634 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0309 634 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0309 634 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Clacu03g0309 634 Gene3D - 339 404 - -
Clacu03g0309 634 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0309 Clacu-Chr3:3611049 Clacu04g0116 Clacu-Chr4:2741013 1.40E-24 dispersed
Clacu01g0156 Clacu-Chr1:1588393 Clacu03g0309 Clacu-Chr3:3611049 4.60E-132 transposed
Clacu02g0968 Clacu-Chr2:13335426 Clacu03g0309 Clacu-Chr3:3611049 4.60E-100 transposed
Clacu02g1686 Clacu-Chr2:30300477 Clacu03g0309 Clacu-Chr3:3611049 1.60E-139 transposed
Clacu02g1954 Clacu-Chr2:33112920 Clacu03g0309 Clacu-Chr3:3611049 3.80E-134 transposed
Clacu04g0695 Clacu-Chr4:20930292 Clacu03g0309 Clacu-Chr3:3611049 7.30E-119 transposed
Clacu05g0067 Clacu-Chr5:875198 Clacu03g0309 Clacu-Chr3:3611049 7.10E-138 transposed
Clacu06g0607 Clacu-Chr6:7007267 Clacu03g0309 Clacu-Chr3:3611049 8.80E-143 transposed
Clacu06g0982 Clacu-Chr6:13991182 Clacu03g0309 Clacu-Chr3:3611049 2.20E-136 transposed
Clacu10g0440 Clacu-Chr10:5489405 Clacu03g0309 Clacu-Chr3:3611049 2.50E-104 transposed
Clacu03g0309 Clacu-Chr3:3611049 Clacu05g2110 Clacu-Chr5:29894069 2.50E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73402 PF00069 Pkinase 1.20E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0309 K08867 - csv:101206177 1048.11