Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0326 ATGGAAAGAGCACAAAACGAAATTCGAAGCATTGTTGGTGACAGAAGAGTTGTATCAGAGAGTGATATTTTAGAAATGCCCTACTTGAAAGCTGTGGTTAAAGAGGTGCTTCGATTGCATCCACCAGCGCCGGTTTCACTTCCAAGAGAAACTATGGAAGATGTGAGGATTGAAGGCCATGATATTCCAGCCAAAACGAGAGTTTTTGTGAATGTTTGGGCAACTGGGAGAGACCCAGAATGTTGGAAGGACCCAGAAAGTTTTGAGCCAGAGAGATTTATGGAGAGTGAAGTTGATTACAGAGGGTTGGATTTTGAGTTCATTCCGTTTGGGGTTGGAAGAAGGATTTGTCCAGGTATTACTATGGGGATCGTCATGATTGAGCTTGCTTTGGCTCAGATATTGCATAGCTTTGATTGGGAGCTTCCAAGTGGGATTGAAGCTAAAGATTTGGATATGACGGAAGTTTTTGGTGTCACAATGCATAGAAAAGCTCACTTGGAGGTTGTAGCAAAGCCTTCCTTTGGCTCATCCATCTCAAATTAA 546 42.67 MERAQNEIRSIVGDRRVVSESDILEMPYLKAVVKEVLRLHPPAPVSLPRETMEDVRIEGHDIPAKTRVFVNVWATGRDPECWKDPESFEPERFMESEVDYRGLDFEFIPFGVGRRICPGITMGIVMIELALAQILHSFDWELPSGIEAKDLDMTEVFGVTMHRKAHLEVVAKPSFGSSISN 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3756594 3757139 + ClG42_03g0032600.10 Clacu03g0326 244891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0326 181 Gene3D Cytochrome P450 1 177 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 PANTHER CYTOCHROME P450 71B11-RELATED 1 171 IPR050193 -
Clacu03g0326 181 Pfam Cytochrome P450 1 164 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 110 119 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Clacu03g0326 181 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 PRINTS P450 superfamily signature 108 117 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 FunFam Predicted protein 1 169 - -
Clacu03g0326 181 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 PRINTS E-class P450 group I signature 117 140 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 PRINTS E-class P450 group I signature 107 117 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu03g0326 181 SUPERFAMILY Cytochrome P450 1 173 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0326 Clacu-Chr3:3756594 Clacu05g2799 Clacu-Chr5:35330899 1.00E-55 dispersed
Clacu03g0324 Clacu-Chr3:3740623 Clacu03g0326 Clacu-Chr3:3756594 9.30E-61 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0326 - - - 0.0