Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0334 ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCTCCGTCTCTCTATCCGCCGCTCTCTCCGCTGCCCCTGCCGCCGTTCCCAACCCTGAACTCGTCGTACAAGAAGTACACAGAAGCATAATCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGGATTGGATTCGGCAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACTCCGGCGACGATGATCCAGTTAACCCTAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGATGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTGATTCGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGCGTCCATATCGCCGGTGGGCCTTGCATTACCATTCAGTACGTGACAAACATTATAATCCATGGTCTCAACATTCACGACTGTAAGCCAGGGGGAAACACGGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGGGACGGCGTTTCGATCTTCGGCGGCAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGTAACGATGGATTGATCGACGCCATTCATGGGTCTACTGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTTACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCGGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGAGATCTGATGCTAAACGGTGCATTTTTCACTGCCTCCGGCGCCGGAGCGTCGTCAAGTTACGCTAGAGCATCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACAATTACAACAAATGCGGGTGCACTGAACTGCAGGAAGGGCTCCCGCTGCTGA 1236 50.08 MAPPTVPLSLLSLFLFSVSLSAALSAAPAAVPNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3829960 3831959 - ClG42_03g0033400.10 Clacu03g0334 244899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0334 411 Gene3D - 62 404 IPR012334 -
Clacu03g0334 411 Pfam Pectate lyase 147 328 IPR002022 -
Clacu03g0334 411 PANTHER PECTATE LYASE 18-RELATED 21 408 IPR045032 GO:0030570(InterPro)
Clacu03g0334 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Clacu03g0334 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Clacu03g0334 411 SMART amb_all 137 334 IPR002022 -
Clacu03g0334 411 FunFam Pectate lyase 62 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2249 Clacu-Chr1:33634586 Clacu03g0334 Clacu-Chr3:3829960 8.90E-123 dispersed
Clacu03g0334 Clacu-Chr3:3829960 Clacu08g1907 Clacu-Chr8:28244138 7.80E-189 dispersed
Clacu03g0334 Clacu-Chr3:3829960 Clacu05g0400 Clacu-Chr5:3446645 4.00E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0334 K01728 - csv:101209736 778.859