Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0337 ATGCCTCTCAAGACCGAACATGGAGCATCCGACAGCTCCCTCGATGAGCACTCCAAGATGGTCCATTCTTCTAAAGTCGTCGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGATGACGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCCAGGTTATCAATGGATGAGAGCAATCAAGACAAAATTGTGGCAATTTGCAAGGATACTAATTCAATGGAAGTTGAAGGTAGACGTTTAAGCAAAATTGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGTAGATGGTGATCAACCTGGTCCAGGTGTTTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTCATGTACCAGAGGTTGGGCCAGCCACAAAAGGCAGTTTTAGCATATGAGAAGGCAGAGGAGATCCTACTCCAAAGTGATGTTGAGATTCAGAGACCAGAGTTGCTCTCATTGGTCCAAATTCATCATGCACAGTGTCTCCTCCTAGAAAGTGCAGGGGATAATAGTTCAAACAAAGAACTTGAACAGGAGGAGCTTGATGAGATTTTTTCTAAACTTGAGCATTCAATGCAATCTGATGTTAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTTACAACTGGTCGAGTGAAGAGTGCTATTTCAGTGTTGTCATCCCTGTTGGCCATTGTTCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCCTATCTTCAAAGTGGAAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACGGATCAAAATCATCCTGCTGCCCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCCGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGCATGAATGTTGCAAAGGAATGTTTGCTAGCGACCCTAAAGGTAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGTGTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCCGTTGCTATGCACCGACTTAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAACTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGGAGATGGCTCGACAATCGATCATTCTATAGCATGGGCTGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGCAGGATTTCGTACAGATCAGAGTGATCTGAGAGAAAAGGAAGAAAACGCTGTCTACAGTTTAAATCAGGCAATAGCTGAGAACCCAGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCATAGCCTCTGTACGCGAGAATTTAAAACATCACAAAGATACCTCAAAGCTGCAATTGCCCGCATCAAGAACTGTAGTTTTGCATGGTCAAACCTAGGTATCTCATTGCAACTCTCAGACAACCCGACACAGGCTGAAGAAGTATACAAGAAAGCTTTGTCATTGGTGGCCACAGAACAAGCACATACTGTATTTTGTAACCTCGGAAATCTATATCGACAACAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCCGGTTATGCACCTGCCTTTAACAATCTAGGATTAGTGTTTATTGCGGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCGGATCCGTTACTCGATTCAGCTAAGTCGAACTTGATTAAAACAGTAGGCATATCTCGACTATGTAATAGCTTATCGTTGTGTCATGTTAAAGATTGA 1944 43.47 MPLKTEHGASDSSLDEHSKMVHSSKVVVLADLNVDPPEMDDDSSVHVSASTISRLSMDESNQDKIVAICKDTNSMEVEGRRLSKIGKCRSRNNKVEYSLDSAADVDGDQPGPGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIQRPELLSLVQIHHAQCLLLESAGDNSSNKELEQEELDEIFSKLEHSMQSDVRQAAVWNTLGLLLLTTGRVKSAISVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLATLKVDPKAAHAWANLANVYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGSTIDHSIAWAGLSMVHKTQHEIAAGFRTDQSDLREKEENAVYSLNQAIAENPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARIKNCSFAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSAKSNLIKTVGISRLCNSLSLCHVKD 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3871139 3878710 + ClG42_03g0033700.10 Clacu03g0337 244902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0337 647 MobiDBLite consensus disorder prediction 1 21 - -
Clacu03g0337 647 SMART tpr_5 587 620 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 SMART tpr_5 517 550 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 SMART tpr_5 354 387 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 SMART tpr_5 553 586 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 SMART tpr_5 140 173 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 SMART tpr_5 231 264 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 SMART tpr_5 265 298 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 ProSiteProfiles TPR repeat profile. 553 586 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 ProSiteProfiles TPR repeat profile. 587 620 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 MobiDBLite consensus disorder prediction 101 121 - -
Clacu03g0337 647 Pfam Tetratricopeptide repeat 242 301 - -
Clacu03g0337 647 SUPERFAMILY TPR-like 339 397 IPR011990 GO:0005515(InterPro)
Clacu03g0337 647 ProSiteProfiles TPR repeat region circular profile. 553 584 - -
Clacu03g0337 647 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 27 645 - -
Clacu03g0337 647 Gene3D Tetratricopeptide repeat domain 466 551 IPR011990 GO:0005515(InterPro)
Clacu03g0337 647 Gene3D Tetratricopeptide repeat domain 119 326 IPR011990 GO:0005515(InterPro)
Clacu03g0337 647 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 SUPERFAMILY TPR-like 463 618 IPR011990 GO:0005515(InterPro)
Clacu03g0337 647 Gene3D Tetratricopeptide repeat domain 335 425 IPR011990 GO:0005515(InterPro)
Clacu03g0337 647 ProSiteProfiles TPR repeat region circular profile. 587 618 - -
Clacu03g0337 647 Pfam Tetratricopeptide repeat 140 169 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 Pfam Tetratricopeptide repeat 354 387 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 Gene3D Tetratricopeptide repeat domain 552 630 IPR011990 GO:0005515(InterPro)
Clacu03g0337 647 SUPERFAMILY TPR-like 134 309 IPR011990 GO:0005515(InterPro)
Clacu03g0337 647 Pfam Tetratricopeptide repeat 554 616 - -
Clacu03g0337 647 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515(InterPro)
Clacu03g0337 647 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0337 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32