Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0339 ATGATTGGAGAAACAGGGGAAATTGTATTCGACAAGATTTCTAGAAAGAAGAGGCAAAAGTTACCTTCAACTTTGCTTCTATCAATGGCAGCAACAGCCATGGCTGCGGAGCCGACGCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTGGCTCCTGAATATCATCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTACCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTTAATAAGTCGCTTGCAGCTCGTGCCCCCTGTTCTGGCTCGACTAATTCCAAGTCTCCGCCTACATTCACAACTCGACAACAGCAGATCGGGTTTTGCCCGCGGAAAACACGACCTGTTCAGAAATCAGTGTGGCAGAGCGGTGAGTACTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGCTATTTGAAGAAATGTGCCAAGAAAGGAGGGCTTTCGTCTTTGGAAATCGAGACGCTCTATTGGAGGGCCACTTTGGACAAGCCCTTTTCGGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCGGTAAGTGCAAAAATTTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAGGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTTTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTAGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACTTGGTATGGTGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCCCTTGTAACTTTTGCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCCATCAATTATCCTCCAATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCACCTATGTGCACTGGTGCTGAACCAAGAAGTTCACGACTGAAAGATAAAAGGAGGAGTGAAGGGGAAACGGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACACCCTGCTGGACATTCTTGGAAGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCGATTTATTCCAGACTGCGTGTTGGATCCCACTTGAGAGCAAAATCTAGATTTCCTGCTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGTCCGGGAATTAATCGAGTGAAGGGTTTCTATTCAGCTAACGGGCTATATTCTACTCTATCTGAAAGTAGCATGGACAATTTATGTGCTTCAAGTTCAAGGTCTTTGAATGCCAACCACGAACGGGGTGGTAATGTTCAAAGCGATGGATTATCAGATCAAAGACTCTTTTCTTGTGTCACATGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCTGGGATAGCCAGTGAAGGGATTGCTACTAGAGATGGGCATGCAGTTAGCTCTCGGCAGAATAGTAACAGGGGAAAAAGAGATAAATGTGTCTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTACAGTAGCAGATGAAAGTTACGAAGCTAATTTGAATACTGAAAAACGGAATGAGACTTCTGCCCTTGGAATGCTTGCATTGACTTATGGACATTCTTCTGATTCTGAGGAGGACCATGCTGAAGCAGATGCTGCTTTAAATGCAGATGATGATGCTAAACTAATGATTTGTTCTTCCGAAGACCAATATCAGTTTGAGAATTCTGGCCTTTCTTCTGGTGAATATTGCAAGAATACTGCAATTTCGAATAACGATCCCTTGTCTTATGGTGTTAACGCTGCAGATCAAATGCAATTTCAAGTCAATGACTATGAAGAATTTGGGCGAGCTAGATCTGATTCCAAAGATTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACAAAGAAAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGTTAGATCTTCCTTGGATGCTGATACTGATAAACCAGTGTTTGACAAGTCCACTGAACCAGTGGAGATTGAGGATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCGAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGAACATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAACTGCTGGCACAAGAATTAAATATGAACCATCTGTGGACTGATACAATGTTCAGAGGTGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAACTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAACCTATTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGAACTGGCAAGCTGAAAAGAGTAGTTGCAGGGAAATGGTGCGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTACTGGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTCTCTTCTTGGACAATGTCAGATGAGAAGATTGATAGGAAACCAGAAAATATCCAGAAAAACGAGACTGTTATGGTCAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGCGGAACAACTAAGAAAGCCAAACCTATAGAGTCAGAGGACATGGTTTCAGATGCTTCGGTTGAAGATTGTATCCATCAGCATCATAGTATTCTACGAAACAAGCGATCCAAATTTGTTGAGAGCAATGATGCTAGATCAGATGATTCTGTGGAGGATGATTCTTGTAGAAAACATGGAGTTCCCATTAGCAAGGGAGTGACATATTGTGGGATAGATGATACTGGTTCAGATGATTCTCTTGGAGATCGTCATAATCTGCGCAGAGGGTTCTCTGGATTCAAGCTGCCTAAGTGGGGTGAGATAGAACCTGCACTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAAGACAGAAGAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGTTCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCATTTCACATGATATACGGGATGATAGTTTTCTTTGGCATCATCAAAGGCCTTCCAGAAGCAAGAAGGCCAAATCTATCGAGAGTGAAGATGCAGTTTCAGAGGACTCCCTAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAAGAAAACCAGTCAAACGCACTGCAAGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATATTAGAAGAAATGTGCAATTCAAATACAGTGAGAGAGAAATTACATCAGATGACCAGCTTGATGATACTGCTAATCAAAGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTCAAGACAGAGACAATTTCACAAATGAAACAAGAGATCCTGCGACCTGCAAGGCGGAGAGCCTCTCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATACGTTAAAATTAGAGACCCCTCAGCCAAAAATACAGCCTGCCACAAATAGACGAGGTAAGCAAACTAAGAGGAATAGTAAATCGACTGATTTAGAGTCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGAAAAAGAACCCCAAAGCCTACAAAACTTTCAGAAGCAAAGCCAAAAGATAAAAAACCAATTGGCAAGAAAAAGGTGAAGAATGGTTCATCCTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGACGAGGAATCAGAGTATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCATGCACAAACGAAATATTTGTCCTGTCAAGGGGTGTGGGAAGAAGTTTTTCTCACATAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTTAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGAGCTTCACCTGACAGGGAATTTGAATGCAAGAATCTGTCCATTAGAGACAAATTTGGCCTCCGAATCTGGCCTTTTTCTCTACCTTTCCATGCCTTAA 4857 42.6 MIGETGEIVFDKISRKKRQKLPSTLLLSMAATAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAPCSGSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCAKKGGLSSLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKIFREAGEGTTLGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPMCTGAEPRSSRLKDKRRSEGETVIKELFVQNIVENNTLLDILGRGASVVLLPPGSLESIYSRLRVGSHLRAKSRFPAGVCSSKEETKSPQSFDYDNLALENSPGINRVKGFYSANGLYSTLSESSMDNLCASSSRSLNANHERGGNVQSDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGIATRDGHAVSSRQNSNRGKRDKCVSDGLYDVPVQAVNRQLTVADESYEANLNTEKRNETSALGMLALTYGHSSDSEEDHAEADAALNADDDAKLMICSSEDQYQFENSGLSSGEYCKNTAISNNDPLSYGVNAADQMQFQVNDYEEFGRARSDSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNVRSSLDADTDKPVFDKSTEPVEIEDMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVNILLLCHPDYPKMEAEAKLLAQELNMNHLWTDTMFRGATQDEEKRIQLALDSEEATPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFSSWTMSDEKIDRKPENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDASVEDCIHQHHSILRNKRSKFVESNDARSDDSVEDDSCRKHGVPISKGVTYCGIDDTGSDDSLGDRHNLRRGFSGFKLPKWGEIEPALSDDSLEHYSSQHRGKNIKSKTEEYIERQDALSDECLESGSLKQYRRIPRSKQTKVLKKNAISHDIRDDSFLWHHQRPSRSKKAKSIESEDAVSEDSLENNSHQHRSMPQRKPVKRTAREDAFSDGPDEDDNSLLQHRNIRRNVQFKYSEREITSDDQLDDTANQSRRRVLRSKPVKTETISQMKQEILRPARRRASQTLKEEFAQSLKRGGRHTLKLETPQPKIQPATNRRGKQTKRNSKSTDLESEEEQPGGPSTRLRKRTPKPTKLSEAKPKDKKPIGKKKVKNGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELAMHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKELHLTGNLNARICPLETNLASESGLFLYLSMP 1618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3891599 3900390 + ClG42_03g0033900.10 Clacu03g0339 244904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1050 1072 - -
Clacu03g0339 1618 FunFam Probable lysine-specific demethylase ELF6 45 396 - -
Clacu03g0339 1618 ProSiteProfiles Zinc finger C2H2 type domain profile. 1556 1587 IPR013087 -
Clacu03g0339 1618 SMART JmjN_1 51 92 IPR003349 -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1352 1381 - -
Clacu03g0339 1618 Pfam jmjN domain 53 86 IPR003349 -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1401 1420 - -
Clacu03g0339 1618 Pfam JmjC domain, hydroxylase 257 374 IPR003347 -
Clacu03g0339 1618 ProSitePatterns Zinc finger C2H2 type domain signature. 1558 1582 IPR013087 -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1428 1442 - -
Clacu03g0339 1618 ProSitePatterns Zinc finger C2H2 type domain signature. 1498 1520 IPR013087 -
Clacu03g0339 1618 ProSiteProfiles Zinc finger C2H2 type domain profile. 1526 1555 IPR013087 -
Clacu03g0339 1618 PANTHER LYSINE-SPECIFIC DEMETHYLASE 38 1354 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Clacu03g0339 1618 FunFam Probable lysine-specific demethylase ELF6 1523 1552 - -
Clacu03g0339 1618 Gene3D Classic Zinc Finger 1494 1580 - -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1318 1339 - -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1237 1270 - -
Clacu03g0339 1618 FunFam Probable lysine-specific demethylase ELF6 1553 1582 - -
Clacu03g0339 1618 Gene3D Cupin 45 396 - -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1237 1299 - -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 782 801 - -
Clacu03g0339 1618 SUPERFAMILY beta-beta-alpha zinc fingers 1512 1554 IPR036236 -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 771 801 - -
Clacu03g0339 1618 SUPERFAMILY beta-beta-alpha zinc fingers 1544 1578 IPR036236 -
Clacu03g0339 1618 SUPERFAMILY Clavaminate synthase-like 237 403 - -
Clacu03g0339 1618 ProSitePatterns Zinc finger C2H2 type domain signature. 1528 1550 IPR013087 -
Clacu03g0339 1618 ProSiteProfiles Zinc finger C2H2 type domain profile. 1496 1525 IPR013087 -
Clacu03g0339 1618 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Clacu03g0339 1618 SMART cupin_9 223 392 IPR003347 -
Clacu03g0339 1618 SMART c2h2final6 1496 1520 IPR013087 -
Clacu03g0339 1618 SMART c2h2final6 1473 1495 IPR013087 -
Clacu03g0339 1618 SMART c2h2final6 1526 1550 IPR013087 -
Clacu03g0339 1618 SMART c2h2final6 1556 1582 IPR013087 -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1098 1117 - -
Clacu03g0339 1618 ProSiteProfiles JmjC domain profile. 226 392 IPR003347 -
Clacu03g0339 1618 MobiDBLite consensus disorder prediction 1318 1468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0339 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0339 Clacu-Chr3:3891599 Clacu08g0911 Clacu-Chr8:19223985 2.30E-10 dispersed
Clacu03g0339 Clacu-Chr3:3891599 Clacu10g0136 Clacu-Chr10:1650955 1.50E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47384 PF02373 JmjC 1.20E-36 CL0029 Clacu TF