Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0344 ATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAAAGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTTGCAGCTTCATTTCCAAGAGGCAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTCATTCTTTACTTGCTTCAATGGGTGGATTGCTCATGTTCATATCTATCTTTGAGTTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGGACTTTGATGGAAGGCCAGATATCTCATCATACAGAAGGAAAGCAACTATAAGTGAATTCTACTCTTTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCCCCACAAGGGAATGGCCATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGATGAATGTGGGATCTGTTTGGAGTCGCATACCAAAATTGTCTTGCCACATTGTTGCCATGCCTTGTGCACAAAATGCTACCATGATTGGAAATCGAAATCGGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAATGACGTGGTCGACACTCATACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTCATAAACAACCTACCTGAGGATACACCTGATGTTCTATTCTTAATGTATTATGAGCACTTGTTGTAA 762 40.29 MLDCYQRLSSGHSYKDFLEFLEADIRHANAFAASFPRGKDGSSFQMKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISEFYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3914766 3916980 - ClG42_03g0034400.10 Clacu03g0344 244909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0344 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Clacu03g0344 253 SUPERFAMILY RING/U-box 146 200 - -
Clacu03g0344 253 PANTHER RING FINGER PROTEIN 41, 151 13 246 - GO:0016567(PANTHER)|GO:0061630(PANTHER)
Clacu03g0344 253 FunFam RING/U-box superfamily protein 138 204 - -
Clacu03g0344 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Clacu03g0344 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Clacu03g0344 253 SMART ring_2 157 194 IPR001841 -
Clacu03g0344 253 Pfam Zinc finger, C3HC4 type (RING finger) 154 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0344 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0344 Clacu-Chr3:3914766 Clacu05g2820 Clacu-Chr5:35477543 7.10E-76 dispersed
Clacu03g0344 Clacu-Chr3:3914766 Clacu08g1901 Clacu-Chr8:28204865 3.40E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g900 . . . . . Bpe13g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0047 . . Lsi02g00469 Csa01g00926 Chy12g01201 . . . Bda11g01623 . . . . . . . . . . . . . . . . . . . . . Cla03g00325 Cam03g0342 Cec03g0334 Cco03g0347 Clacu03g0344 Cmu03g0949 Cre03g0642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76