Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0356 ATGGGATCGCTCGGAATTTATTCAGAATCAGGAGTAACGAAGAAGGGAAGCAGAGGCTATGACGTTCCAGAGGGAGTGGACATTCGAGGACGCTATGATGAAGAATTTGCCAAGATTCTCAACAAGGAAGCCTTGCTGTTTGTGGCTGATTTGCAGAGGACTTTCAGAAACCACATTAAGTATTCGATGGAATGCCGCAGAGAAGCTAAGAGGAGGTATAATGAAGGAGCGTTGCCGGGGTTCGATCCAGCCACCAAGTATATAAGGGATTCTGAGTGGACATGTGCCCCTGTCCCACCGGTGGTTGCTGATCGGAGAGTGGAGATCACCGGACCTGTGGAGCGGAAGATGATCATCAACGCACTTAATTCTGGAGCTAAAGTTTTCATGGCGGATTTTGAAGATGCACTGTCACCAAATTGGGAGAATTTGATGAGAGGGCAAATTAATCTTAAGGATGCAGTAGATGGGACTATAAGCTTCCATGACAGAGCTAGAAACAGAGTTTATAAGCTTAATGATCAGATAGCCAAGCTCTTCGTCCGCCCTCGAGGTTGGCACTTGCCTGAGGCTCATATATTCATCGATGGCGAGCCTGCCACCGGCTGTCTTGTGGACTTTGGGCTCTACTTTTTCCACAACCATTCCAATTTTCGGCGCTCTCAAGGTCAAGGTTATGGCCCTTTCTTTTACCTTCCCAAAATGGAGCACTCCAGAGAAGCTAAAATATGGAACAGTGTATTTGAGAGGGCAGAGAAGATGGCAGGGATAGAGAAGGGCAGCATCAGGGCCACTGTCCTAATTGAAACACTTCCAGCAGTGTTTCAAATGAATGAAATACTCTATGAGCTAAGAGATCACTCTGTAGGATTGAACTGTGGTAGATGGGATTACATATTCAGCTATGTCAAAACCTTCCAGGCTCACCCTGATCGTCTATTACCCGATCGGGTCCAAGTTGGTATGACCCAACATTTCATGAGGAGCTATTCTGATCTCCTTATCAGAACTTGTCATAGGCGTGGTGTCCACGCCATGGGAGGCATGGCTGCTCAAATTCCAATTAGAGACGATCCGAAGGCAAATGAGGTAGCACTTGAGTTAGTGAGGAAGGACAAATTGAGGGAAGTAAAAGCAGGACATGATGGAACATGGGCAGCACATCCAGGTTTAATCCCAGCTTGTATGGAAGTCTTCACCAACAACATGGGGAATGCCCCCAACCAAATTCGATCCGTGAGACGAGATGATGCTGAAAACCTAACCGAAGAAGACCTTTTACAGCGACCGAGGGGTGTTCGTACAATGGAAGGGCTTCGTTTGAACACCCGAGTCGGAATTCAGTACCTAGCTGCATGGTTAACGGGAGTTGGCTCGGTGCCTCTATACAACCTTATGGAAGATGCAGCCACAGCAGAAATCAGCAGGGTTCAAAACTGGCAATGGTTGAAGTATGGAGTGGAATTGGATGGGGATGGGCTTGGTGTTAGAGTTAACAAGGAATTGTTTGGGAGAGTGGTGGAAGAAGAAATGGAAAGGATTGAAAAGGAAGTTGGGAAAGAGAAATTCAAGAAGGGAATGTACAAAGAAGCTTGCAAGATGTTCACAAGGCAATGCACAGCTCCAAGTTTGGATGATTTTTTGACCTTAGATGCTTATAATTACATTGTGATACATCATCCAAGGGAAATTTCCAGGCTCTAA 1704 46.13 MGSLGIYSESGVTKKGSRGYDVPEGVDIRGRYDEEFAKILNKEALLFVADLQRTFRNHIKYSMECRREAKRRYNEGALPGFDPATKYIRDSEWTCAPVPPVVADRRVEITGPVERKMIINALNSGAKVFMADFEDALSPNWENLMRGQINLKDAVDGTISFHDRARNRVYKLNDQIAKLFVRPRGWHLPEAHIFIDGEPATGCLVDFGLYFFHNHSNFRRSQGQGYGPFFYLPKMEHSREAKIWNSVFERAEKMAGIEKGSIRATVLIETLPAVFQMNEILYELRDHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMRSYSDLLIRTCHRRGVHAMGGMAAQIPIRDDPKANEVALELVRKDKLREVKAGHDGTWAAHPGLIPACMEVFTNNMGNAPNQIRSVRRDDAENLTEEDLLQRPRGVRTMEGLRLNTRVGIQYLAAWLTGVGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGVRVNKELFGRVVEEEMERIEKEVGKEKFKKGMYKEACKMFTRQCTAPSLDDFLTLDAYNYIVIHHPREISRL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4026799 4029619 - ClG42_03g0035600.10 Clacu03g0356 244921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0356 567 FunFam Malate synthase 22 432 - -
Clacu03g0356 567 Pfam Malate synthase, N-terminal domain 24 87 IPR048356 -
Clacu03g0356 567 NCBIfam malate synthase A 39 556 IPR006252 GO:0004474(InterPro)|GO:0006097(InterPro)
Clacu03g0356 567 ProSitePatterns Malate synthase signature. 285 300 IPR019830 GO:0004474(InterPro)|GO:0006097(InterPro)
Clacu03g0356 567 SUPERFAMILY Malate synthase G 22 557 IPR011076 GO:0003824(InterPro)
Clacu03g0356 567 CDD malate_synt_A 39 557 IPR006252 GO:0004474(InterPro)|GO:0006097(InterPro)
Clacu03g0356 567 PANTHER MALATE SYNTHASE 21 561 IPR006252 GO:0004474(PANTHER)|GO:0004474(InterPro)|GO:0005737(PANTHER)|GO:0006097(PANTHER)|GO:0006097(InterPro)
Clacu03g0356 567 FunFam Malate synthase 433 557 - -
Clacu03g0356 567 PIRSF Malate_synth 18 558 IPR006252 GO:0004474(InterPro)|GO:0006097(InterPro)
Clacu03g0356 567 Pfam Malate synthase, C-terminal 434 555 IPR048355 -
Clacu03g0356 567 Gene3D Malate synthase, domain III 433 557 IPR044856 -
Clacu03g0356 567 Pfam Malate synthase, TIM barrel domain 178 428 IPR001465 GO:0004474(InterPro)|GO:0006097(InterPro)
Clacu03g0356 567 Gene3D Malate synthase, domain 3 22 432 IPR046363 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0356 K01638 - - csv:101214523 1108.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g152 . . . . . Bpe13g00208 . . Cmo13g00822 . . . . . . Cpe20g00320 . . . . . . . . . . . . . . . Cone2ag0959 . . . Lsi02g00483 . . . . . Bda11g01607 . . . . . . . . Cma13g00791 . Car13g00639 . . . . . . . . . . Cla03g00340 Cam03g0355 Cec03g0346 Cco03g0361 Clacu03g0356 Cmu03g0961 Cre03g0654 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012250 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29