Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0357 ATGGCAGATCGGAATCACTTTAACGCCGCCCATTTAGTTGATCTTCGAAGCGGTTTCTGTCCTCAGACGCAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCACCATTATCTCAGCCTCTCTCCGTCACCGAACACGCTCTTTCTCTCCTTCAATCATCCCCTCCCCCTGCAAACGCCACCGTTCTCATCGACTCCAATTCCGGCTTCCATCTCTCCTACGCCATTTTCATCCGTCAAATTCGAACCCTCGCCTCAAATCTCAAAGCTTTAACCTCCCTCTCCAATGGACAAGTGGCATTTATTCTCGCTCCTACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGTGTCATTCTCTCTCCGGCAAATCCAACCGGTTCCGAATCAGAGATTTCTCATCAGATTCGACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACGGCGTCCAAGCTCCCTAGGTTTCGATTCGGAACCGTCCTGATCGATTCACCTCATTTCCTCTCCATGATGACTGAAATCAACAGATCCGATCGTCTCACCGACATCAAAATCGACCAGTCCGACTCGGCGGCGATTCTGTACTCGTCAGGTACCACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGGAATCTTATTGCGGTGAACTCAGGGCGTACTGCTCTTCAATCGGAGATCAAAGAAGGAGAAATGGAGCCACATCCGGTTTCTCTGTGTCTGTTGCCTTTGTTCCATGTTTTCGGATTCGTGATATTGCTTCGAGCGATTTCGCGAGGAGAAACGTTGGTTCTGATACAGAGATTCGATTTCGAAGCGATGCTAAGAGCAGTGGAGAAGTTTAGGGTTATGTACATCCCTGTTTCTCCGCCGCTTGTGGTGGCGATGCGAAGTCGGAACTGCGCTCCCCTTGGGAAAGAAGTGATCGATAAATTCCATCAGAAATTGCCCAACGTTGAAATTGTCCAGGGATATGGCTTGACAGAGAGTACAGCGGGGGCAGCAAGAACTCTGGGGCCTGAGGAAACCAACAACACCAATTCAGTAGGTCGCTTATCTGAAAATATGGAAGCCAAGATAGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGGCCACAAAGGAGAGCTTTGGCTGCGAGGTCCTGTAATCATGAAAGGTTATGTTGGAGATGACAAGGCAACTAATGAAACCTTACATCCAAATGGATGGCTAAAGACTGGTGATCTTTGCTATTTTGATTCTGATGGATTCCTGTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATAATTGACGCTGCCGTGATACCCTATCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCTGGAAGCAATATCACCGAGGCCCAAGTTATTGATTTCATTGCAAAACAGGTTGCGCCATACAAGAAAATTCAACGAGTTTCTTTTATCGACGCAATCCCGAAATCGCCCGCAGGGAAGATTCTAAGGAGGGAGCTTGCGAAACATGCCCTCTCACATGGTTCTAATAAGTTGTAA 1623 47.63 MADRNHFNAAHLVDLRSGFCPQTQIFHSLRPPLSLPPLSQPLSVTEHALSLLQSSPPPANATVLIDSNSGFHLSYAIFIRQIRTLASNLKALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVILSPANPTGSESEISHQIRLSKPVIAFATSSTASKLPRFRFGTVLIDSPHFLSMMTEINRSDRLTDIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNSGRTALQSEIKEGEMEPHPVSLCLLPLFHVFGFVILLRAISRGETLVLIQRFDFEAMLRAVEKFRVMYIPVSPPLVVAMRSRNCAPLGKEVIDKFHQKLPNVEIVQGYGLTESTAGAARTLGPEETNNTNSVGRLSENMEAKIVDPASGEALPPGHKGELWLRGPVIMKGYVGDDKATNETLHPNGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNITEAQVIDFIAKQVAPYKKIQRVSFIDAIPKSPAGKILRRELAKHALSHGSNKL 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4031959 4036808 - ClG42_03g0035700.10 Clacu03g0357 244922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0357 540 Pfam AMP-binding enzyme 58 395 IPR000873 -
Clacu03g0357 540 Gene3D - 434 534 IPR045851 -
Clacu03g0357 540 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Clacu03g0357 540 Gene3D - 34 433 IPR042099 -
Clacu03g0357 540 CDD 4CL 47 528 - -
Clacu03g0357 540 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Clacu03g0357 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 528 - GO:0016405(PANTHER)
Clacu03g0357 540 FunFam 4-coumarate--CoA ligase 2 434 535 - -
Clacu03g0357 540 SUPERFAMILY Acetyl-CoA synthetase-like 60 534 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0357 Clacu-Chr3:4031959 Clacu05g1675 Clacu-Chr5:25327764 1.70E-127 dispersed
Clacu03g0357 Clacu-Chr3:4031959 Clacu03g0358 Clacu-Chr3:4042059 1.20E-234 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0357 K01904 - csv:101213796 884.019