Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0358 ATGGCTGCCCATTCCGTTGATTCCCGCAGCGGTTTCTGTCCTCAAACCAAGATTTACAAGAGCCTCCGACCACCCTTCTCGCTTCCGCCGTTATCTCAGCCACTCACCGTTGCCGGACATGCTCTTTCGGTTCTCCGATCATCTCTTCCTCCGCCGAACACTGCTGCTCTCGTCGACTCCGACTCCGGCGTCACTGTCTCTTACGCCCTTTTCCTCCGTCAAATCCGAAACCTCACCTCTAACCTTAGAGCTCTTTACTCCTTCTCCAATGGTCAAGTGGCTTTTATTCTTTCACCGACTTCTCTGCAAATTCCTGTGTTGTATTTCGCTCTCTTATCTCTCGGCGTTATTGTCTCTCCGGCTAATCCAATCAGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCTGTAAACCGGTCATTGCCTTCGCTACTTCCTCAACGGCGTCCAAGCTCCCGAGGCTTCCACTTGGTACTGTACTGATAGATTCGCCGGAGTTTCTATCTATGATAACTGAAATTAGTCGATTGGAAGGAGTAAACGATGGCATTGTGGACGGAGAAATCAATCAAAACAACTCCGCGGCGATTCTTTACTCTTCAGGGACTACCGGACGAGTGAAAGGCGTCTTACTCTCTCACCGGAACCTCATATCGGCGATCTCTGGGGTTCAAGTATTGGAGAAAACGCCCGTCGAAGGAGAGATTGAGCCACATCCCGTTGCTCTGTGTCTATTACCTCTGTTCCATGTTTTCGGGTTCTTTATGTTGTTTCGATCGATTTCAGAGGGCAATACATTGGTTCTGATGCGTAAATTCGATTTCCAGAGGATGTTAGGAGCAGTGGAGAAGTATAGGGTTACATACATTCCGGTTTCTCCGCCGCTGGTGGTGGCGATGGCCAAATCGGAGTTGGTGGCTAAGTATGATCTCAGCTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCATTGATAAATTCCATCTCAGGTTTCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGGAGCGGCATCAAGAACTGTGGGGCCTGAAGAATGCAGTAATGCAGGTTCAGTAGGTCGCCTATCTGAAAATATGGAAGCCAAAATAGTTGATCCTTCGTCTGGAGAAGCCTTACCTCCTGGTCACAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAGGGCAACCGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCCGATGGATTTCTCTACATCGTTGATCGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCCATCCCGAGATCCTTGACGCTGCTGTGATATCCTATCCTGATGAAGAAGCCGGAGAGATTCCATTAGCTTATGTGGTTAGAAAGCCCGAAAGTAATATCAGTGCGACTCAAGTCATGGATTTCATTGCAAAACAGGTTGCACCATACAAGAAAATCCGACGAGTTTCTTTTGTCAACACAATCCCAAAATCGCCTGCAGGGAAGATTCTTAGGAGGGAGCTTGTCCAACATGCTCTCTCTCATGGTTCTAGCAAGCTATAA 1662 47.47 MAAHSVDSRSGFCPQTKIYKSLRPPFSLPPLSQPLTVAGHALSVLRSSLPPPNTAALVDSDSGVTVSYALFLRQIRNLTSNLRALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVIVSPANPISSESEIAHQVSLCKPVIAFATSSTASKLPRLPLGTVLIDSPEFLSMITEISRLEGVNDGIVDGEINQNNSAAILYSSGTTGRVKGVLLSHRNLISAISGVQVLEKTPVEGEIEPHPVALCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFQRMLGAVEKYRVTYIPVSPPLVVAMAKSELVAKYDLSSLQILGCGGAPLGKEVIDKFHLRFPNVEIIQGYGLTESSGAASRTVGPEECSNAGSVGRLSENMEAKIVDPSSGEALPPGHKGELWLRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEILDAAVISYPDEEAGEIPLAYVVRKPESNISATQVMDFIAKQVAPYKKIRRVSFVNTIPKSPAGKILRRELVQHALSHGSSKL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4042059 4045252 - ClG42_03g0035800.10 Clacu03g0358 244923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0358 553 Gene3D - 447 547 IPR045851 -
Clacu03g0358 553 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Clacu03g0358 553 CDD 4CL 29 541 - -
Clacu03g0358 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 541 - GO:0016405(PANTHER)
Clacu03g0358 553 Pfam AMP-binding enzyme 52 408 IPR000873 -
Clacu03g0358 553 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Clacu03g0358 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 547 - -
Clacu03g0358 553 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Clacu03g0358 553 Gene3D - 34 446 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0358 Clacu-Chr3:4042059 Clacu05g1675 Clacu-Chr5:25327764 1.10E-134 dispersed
Clacu03g0357 Clacu-Chr3:4031959 Clacu03g0358 Clacu-Chr3:4042059 1.20E-234 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0358 K01904 - csv:101211791 974.156