Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0389 ATGAAGTTGAAGCTGTGTGTTGTGTGTAATGGTAATGATCTAATCCAAATGGATTTCCTCAACAGTTTCTTAAACCTTATACTTCCACCAATATCTCTAACAGCCTTCTTCTTCTTTCTCCCAATTTACTTGTTTTTCAAGTCCCTCTCATTCATAACAAGCTCCATCTTCAGCGAAGATGTCGCCGGAAAAGTTGTTCTCATCACCGGAGCATCCTCAGGCATCGGCGAGCATCTGGCATACGAATACGCTAAAAGAGGAGCTTATTTGGCGTTGGTTGCCAGAAGAGAAAACCGGCTCCAGGAAGTGGCCGCCGTGGCAGAGTCTATAGGCTCACCCTACGCCCTCGTAATTCCGGCGGATATTTCCAAGGTTGAAGATTGTAAACGATGTATCCAAACCACCGTCACCCACTTCCGACGACTGGATCATTTGGTAAACAATGCGGGGGTATCCAGCATCAACCTGTTTGAAGAATACGACAACCTCCAAAATGCTGTCCCAGTAATGGACGTAAACTTCTGGGGAATGGTATATTGTAGTTACTATGGGATTCCACACTTAAAGCAAAGCAGAGGGAAGATCATCGGAATTGCTTCCGCCGCTGCATGGCTACCTGCCCCCAGGCTCAGCTTCTACACCTCCAGCAAAGCAGCAGTGATAAGCTTCTACGAGACACTGAGAGTGGAAGTTGGAAGAGAGATCGGAATTACGATCGTGACCCCAGGGCTGGTTGAATCAGAGATGACACAAGGCAAATTCATGTCCAAAGATGGCCGTTTATACCTTGACAAACAACTTAGAGACGCTACGGTGAGCATAATGCCGATTATGCCAATCAACGACGCGGTGAAGGGGATCTTAAGGAGCGTGTGCAGGGGAGACCGGTACGCGACGGAGCCGCGGTGGATGAGGATGGCGTTTTACTATAAGACGGTGTGGCCTGAGTTAGTAGAGTGGTTTAATTACTTGGTTACTATGTCAGGATCATCTAATTCTCCCACAAACACTTTTGGGAAAAGGCTGCTTCAGCTTAGTGGATTGAAGAAATGGTTTTATCCGGAGTCTGTTCGATCCCAGCAATTGGACCTCAAATCCAACTGA 1104 47.1 MKLKLCVVCNGNDLIQMDFLNSFLNLILPPISLTAFFFFLPIYLFFKSLSFITSSIFSEDVAGKVVLITGASSGIGEHLAYEYAKRGAYLALVARRENRLQEVAAVAESIGSPYALVIPADISKVEDCKRCIQTTVTHFRRLDHLVNNAGVSSINLFEEYDNLQNAVPVMDVNFWGMVYCSYYGIPHLKQSRGKIIGIASAAAWLPAPRLSFYTSSKAAVISFYETLRVEVGREIGITIVTPGLVESEMTQGKFMSKDGRLYLDKQLRDATVSIMPIMPINDAVKGILRSVCRGDRYATEPRWMRMAFYYKTVWPELVEWFNYLVTMSGSSNSPTNTFGKRLLQLSGLKKWFYPESVRSQQLDLKSN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4309056 4311550 + ClG42_03g0038900.10 Clacu03g0389 244954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0389 367 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 151 IPR002347 -
Clacu03g0389 367 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 193 201 IPR002347 -
Clacu03g0389 367 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 213 232 IPR002347 -
Clacu03g0389 367 Gene3D - 48 329 - -
Clacu03g0389 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 59 324 IPR036291 -
Clacu03g0389 367 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 200 228 IPR020904 GO:0016491(InterPro)
Clacu03g0389 367 Pfam short chain dehydrogenase 64 253 IPR002347 -
Clacu03g0389 367 PANTHER RETINOL DEHYDROGENASE-RELATED 62 322 - GO:0005829(PANTHER)|GO:0016491(PANTHER)
Clacu03g0389 367 PRINTS Glucose/ribitol dehydrogenase family signature 140 151 IPR002347 -
Clacu03g0389 367 PRINTS Glucose/ribitol dehydrogenase family signature 65 82 IPR002347 -
Clacu03g0389 367 PRINTS Glucose/ribitol dehydrogenase family signature 187 203 IPR002347 -
Clacu03g0389 367 PRINTS Glucose/ribitol dehydrogenase family signature 213 232 IPR002347 -
Clacu03g0389 367 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0389 K22418 - - csv:101220214 588.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0387 Clacu-Chr3:4292656 Clacu03g0389 Clacu-Chr3:4309056 1.30E-100 dispersed
Clacu03g0389 Clacu-Chr3:4309056 Clacu08g0083 Clacu-Chr8:1684136 1.10E-66 dispersed
Clacu03g0388 Clacu-Chr3:4305086 Clacu03g0389 Clacu-Chr3:4309056 8.40E-144 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g77 . . . . . . . . Cmo13g00852 Cmo18g00231 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0003 . . Lsi02g00519 Csa01g00981 Chy12g01151 Cme12g01572 . . . Bda14g01347 . Bpe15g00229 . . . . . Cma13g00821 Cma18g00304 . . Cpe09g00950 . Bhi08g01521 Tan05g2995 Cmetu12g0843 Lac10g0601 . . . Cla03g00370 Cam03g0390 Cec03g0376 Cco03g0391 Clacu03g0389 Cmu03g0994 Cre03g0686 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93