Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0394 ATGGGTTGCGTTCTTGGCAGACAAACCGCCGACGCTCGCCTGGGCACATCCGGACCTCCCCGTCGCCGCCGGACCACGGATCACCTCTCTCATATCGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTACGTTGGAAAACCAGGGAGTTCGGCAGGACCTGGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTTCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTACAAGGCGAGGGATCTTATTACTGGCAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCTAGAGAGATTTTGGTCCTGAAACGTCTCGATCATCCCAATGTGCTTAAGCTCGAAGGCTTAGTTACCTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAATCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATTAAAGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCATATGACCAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCTGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTTCACAAGATATTTAAATTATGTGGTTCTCCATCTGAAGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCTGAAACATTCAAAGATTTTCCTTCTTCTTCTCTACCTCTTATCGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTTTGAATAGCGAGTTCTTTACTACGGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGGTGATGGTGGAGGCAGGAGAGTAAGAATACGGGATCGGGTTGGTCGGGCTGTCCCGGCACCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGATATCCCAGAGGGGCCATCTTTCATTTGGTGCAGCTGATTCTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGTTCTGTTAAAAGTTCAGCAGCTCCTGGGGGACCATCTCGGAGAAAGAAAGCAGATAAAGATAACCCCTCGATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATTGGGTTATCAATGGATCTGTTGTTTAGAGGTAGAAGTAGAAGAAAGCCCCAGGAGATTTCTGTATATTCTGCAAAATGGGGTTTCAATTGCAATCATTTTGCTGTGCCTTTTAGTAATATCATAATAGTCATTATTTTTGGGAAGCATTTTCTGCTTCTTATGGACATTGGAAATTATATTCTTATGAAAATCTCGAGAAACTTTTGA 1869 46.07 MGCVLGRQTADARLGTSGPPRRRRTTDHLSHIDGVNGDRVKKQTTTLENQGVRQDLDSFSVERRRPSPSLFQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGIKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKATGDGGGRRVRIRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHEISQRGHLSFGAADSSFSSSIFSSKSGSVKSSAAPGGPSRRKKADKDNPSMSSSRKFIRALKPSIGLSMDLLFRGRSRRKPQEISVYSAKWGFNCNHFAVPFSNIIIVIIFGKHFLLLMDIGNYILMKISRNF 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4379818 4383731 - ClG42_03g0039400.10 Clacu03g0394 244959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0394 622 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Clacu03g0394 622 MobiDBLite consensus disorder prediction 1 44 - -
Clacu03g0394 622 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0394 622 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Clacu03g0394 622 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0394 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0394 622 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Clacu03g0394 622 CDD STKc_CDK9_like 101 385 - -
Clacu03g0394 622 MobiDBLite consensus disorder prediction 414 494 - -
Clacu03g0394 622 SMART serkin_6 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0394 622 MobiDBLite consensus disorder prediction 457 471 - -
Clacu03g0394 622 PANTHER CELL DIVISION PROTEIN KINASE 100 385 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu03g0394 622 Gene3D Transferase(Phosphotransferase) domain 1 184 423 - -
Clacu03g0394 622 MobiDBLite consensus disorder prediction 17 38 - -
Clacu03g0394 622 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Clacu03g0394 622 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Clacu03g0394 622 MobiDBLite consensus disorder prediction 511 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0394 Clacu-Chr3:4379818 Clacu03g1683 Clacu-Chr3:30590190 1.70E-192 dispersed
Clacu03g0394 Clacu-Chr3:4379818 Clacu05g0668 Clacu-Chr5:5621629 2.90E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73405 PF00069 Pkinase 3.30E-67 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0394 K08819 - csv:101205716 994.956