Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0395 ATGGCAGCTTTTTCTTATCAATACCAACCCTTTCTTCTTGACTCCATTTTCTTGCCCAACAATCCTCTCAAAATGGGAGGCTTTTTTGATGACCAAAATTTCAACACAAATTGTTTCTCTCAATTTTACCCTCAAGACCAACAACAACAACAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGCCGAACCGCCGGTCGGAAATCAGTTGAAACCGGCTGTTACGGTTACCGTAACTTCCCCTTGTACTAAGAAAAGGAAGAGCCGGAATAATTCTTCCGCCACCTCCGCTCAATCCAAGGGTACTACTGAGAGCACTGCGAAAAAGCAGAAAAGTAAAGGGGAACACGAAGGGAAAGAAAAAGATCATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTTAGAAGAAGGTGGTGCAACCACTGGTTACATTCATGTTAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGCGAAGGGAGAAGATTAGCGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTCTCTTCGACTTCAGAATGGACTTGGACGGCCTAATGATCCAACCAGAGATGACGTCGTTGAGTAGCATAACACCACAACTTCCAGCGATGGCACAATGTAGCATCGTGGCACCACCGGCGTTGATCGACACGACCCCTTCGACGACTCCATCTCCGGCAATCTCCGCCGCAAATAATTTTCCCTTAATGGACTCTTCAGCTAATTTGTTTCTATTTCAACAAGGGATAAGCGCAAATAATGGCTACTCCCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACGTATGTTACTTCCATTAA 1074 44.23 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDQNFNTNCFSQFYPQDQQQQQQQPIYHFPDLSKQSPESSTLVDRSDSAEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTAKKQKSKGEHEGKEKDHQKAKNGKKLEEKKILEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPILFDFRMDLDGLMIQPEMTSLSSITPQLPAMAQCSIVAPPALIDTTPSTTPSPAISAANNFPLMDSSANLFLFQQGISANNGYSQSSQDNVKVSSWDVEDQKRKLLISSGIGDNVCYFH 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4404117 4405944 - ClG42_03g0039500.10 Clacu03g0395 244960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0395 357 MobiDBLite consensus disorder prediction 59 75 - -
Clacu03g0395 357 FunFam Basic helix-loop-helix transcription factor 169 241 - -
Clacu03g0395 357 MobiDBLite consensus disorder prediction 59 154 - -
Clacu03g0395 357 CDD bHLH_AtBPE_like 162 247 - -
Clacu03g0395 357 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983(InterPro)
Clacu03g0395 357 MobiDBLite consensus disorder prediction 88 121 - -
Clacu03g0395 357 MobiDBLite consensus disorder prediction 122 154 - -
Clacu03g0395 357 Gene3D - 169 240 IPR036638 GO:0046983(InterPro)
Clacu03g0395 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983(InterPro)
Clacu03g0395 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983(InterPro)
Clacu03g0395 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 46 317 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu03g0395 357 SMART finulus 178 228 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0395 Clacu-Chr3:4404117 Clacu09g0843 Clacu-Chr9:7767241 1.60E-33 dispersed
Clacu03g0395 Clacu-Chr3:4404117 Clacu06g1926 Clacu-Chr6:29543167 7.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47389 PF00010 HLH 7.00E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0395 - - - 0.0