Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0397 ATGCTTTCTAGAGTTGGGAACGTTCTTTGGATGGAAAATCGCGACGATGAAGACTCTGCTTCTTGGACTAAAAACAACAGCGACCACAACCATCTCAACCACCCTGCTAATTGCTCTGTTTTGGACAACAAGGACGAAATCACCTCTCTCTCTACCTTCAAATCCATGCTCGAGGTTGAAGACGACTGGTGCATCTCTGCTAATGCCCTCCATAACCATAATCACCACACCGACATCAATGACATTACCTTCTCTCAGAATTTCACCGACCCACCTGACAATTTGTTGCTCCCTCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCCTCTGTCTTCAATAACATTGACCCATCTCAATTGCGCTTCTTTTTACCCCAAACTCGCACTTTGTCTTCACTTCATAAGGTAATTTCTAACAACCCTTTAGACCATGGATTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAGATGAACACTCCTAATTTGTGCTTAGGCTCTCAATTGACAGCCCCTAATGTGTCCCCAATGACTGAAAATTGTTCGGGTTTAGCTGGATTCCAGAGTTTCGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTAGAATCTTTTCCCACAGTGGGAGCTCAGCCAACTCTGTTTCAGAAGAGGGCAGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGAAGGGGGCATTGGAAAAAATGAAGTGGGTGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCAGATGAATTGCAAGATACTAGCATCGACACATCTCGTTTTAATTACGATTCTGATGAATTTACTGAGAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAATTGGAGTTTGCCCCATCTGGGGCAGCCTTGACGCCGGGTGCAAGCTTCCACCCGCTGACTCCAACTCCGCCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCAAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGTCGTCGACCGGGTCTCTTGCTCTCCACAGTTAGGGCATTAGATAATCTTGGATTGGACATCCAACAAGCTGTGATTAGCTGCTTTAATGGTTTTGCCATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCCGAGCAGATAAAAGCAATTTTATTGGATTCAGTTGGTTTTAATGGTACGACATAG 1653 45.49 MLSRVGNVLWMENRDDEDSASWTKNNSDHNHLNHPANCSVLDNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPQTRTLSSLHKVISNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPNLCLGSQLTAPNVSPMTENCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPTVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGIGKNEVGDENGKKRKMIYADELQDTSIDTSRFNYDSDEFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPSGAALTPGASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGTT 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4434537 4437342 + ClG42_03g0039700.10 Clacu03g0397 244962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0397 550 SMART finulus 365 414 IPR011598 GO:0046983(InterPro)
Clacu03g0397 550 FunFam BHLH transcription factor 355 423 - -
Clacu03g0397 550 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 317 545 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu03g0397 550 Gene3D - 353 422 IPR036638 GO:0046983(InterPro)
Clacu03g0397 550 MobiDBLite consensus disorder prediction 325 352 - -
Clacu03g0397 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 425 IPR036638 GO:0046983(InterPro)
Clacu03g0397 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983(InterPro)
Clacu03g0397 550 MobiDBLite consensus disorder prediction 325 359 - -
Clacu03g0397 550 CDD bHLH_AtAMS_like 362 426 - -
Clacu03g0397 550 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983(InterPro)
Clacu03g0397 550 Coils Coil 398 418 - -
Clacu03g0397 550 Pfam Plant bHLH transcription factor, ACT-like domain 467 539 IPR054502 -
Clacu03g0397 550 CDD ACT_UUR-ACR-like 479 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1886 Clacu-Chr1:30999372 Clacu03g0397 Clacu-Chr3:4434537 3.50E-33 dispersed
Clacu03g0397 Clacu-Chr3:4434537 Clacu05g1414 Clacu-Chr5:16452216 2.20E-138 dispersed
Clacu03g0397 Clacu-Chr3:4434537 Clacu11g1668 Clacu-Chr11:27894256 8.60E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47390 PF00010 HLH 2.10E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0397 - - - 0.0