Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0404 ATGAAGTGGGGTGTTCTTCTTGTCCTTATTCTGGCCTCCGCCGCCGTGTCGTGGGCCAACAAAGATTTGGAGGATAACGGAGAAGAATACTCGAGCCTTGAGGTTCCGCAGTTGCAGGAGTTTTCAGCTTTCGGGGACTTTCTTTCTTATGGGTTCTACCAGAAAAATTGTCCCGGCGTCGACGGCATCATTCACCGTAAACTCAAGCAGTGGTTCGATAAAGATAACTCCATCGCCGCCGCCCTCTTGAGATTGCACTTCCATGACTGCGTCGTTAGGGGCTGCGACGGTTCTATTCTTCTAGATTACGAGGGAAGTGAGAGAAGGGCTCCAGCGAGCAAGACGCTTAGAGGTTTCGAAGTGATCGACGACATCAAAGCCGAGTTAGAGAAACAGTGCCCTAAAACAGTTTCTTGCGCAGATATTCTAACCGCCGCCGCCAGAGAAGCCACCGTCCTCATCGGCGGCCCATATTGGATGGTACCTTATGGAAGAAGAGACGGAGTGGATTCCATTGCCAAAGAAACTGAGTTAGTACCATTGGGTATTGAAGACATCACTTCTCTCATTGAACTTTACCAATCTCTCGGCTTGAATGTGTTAGATTTGGTCGTTCTTTCAGGGGCACACACGATTGGAAGGGCAACATGTGGAGCGATACAAAACAGGCTTTACAATTATAGCGCAACGGGGAAGCCAGACCCATCGTTGAGCCCAAAATACTTAAACTTCTTGAGAAGAAAGTGCCGATGGGCGTCGGACTACGTGGATCTTGACGCAACAACGCCCAACACATTCGACAACGCCTACTACTCTAATCTCCCAAAGAAGATGGGTCTTTTGTCAACTGATTCTGCTCTCTACACCGATCCAAGAACTTCCCCCATCGTCAAAGCTTTGGCCTATCAGCCCTCCATTTTCCGTCACCAGTTTGCTGTGGCCATGGCTAAGCTTGGGAACGTTCAAGTTCTTACTGATCTTTTCGAAGGCGAGATTCGAACCAACTGCAGTTGTAGAAATTCTCATTGA 1029 48.69 MKWGVLLVLILASAAVSWANKDLEDNGEEYSSLEVPQLQEFSAFGDFLSYGFYQKNCPGVDGIIHRKLKQWFDKDNSIAAALLRLHFHDCVVRGCDGSILLDYEGSERRAPASKTLRGFEVIDDIKAELEKQCPKTVSCADILTAAAREATVLIGGPYWMVPYGRRDGVDSIAKETELVPLGIEDITSLIELYQSLGLNVLDLVVLSGAHTIGRATCGAIQNRLYNYSATGKPDPSLSPKYLNFLRRKCRWASDYVDLDATTPNTFDNAYYSNLPKKMGLLSTDSALYTDPRTSPIVKALAYQPSIFRHQFAVAMAKLGNVQVLTDLFEGEIRTNCSCRNSH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4475915 4478842 + ClG42_03g0040400.10 Clacu03g0404 244969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0404 342 PANTHER PEROXIDASE 25-RELATED 49 336 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu03g0404 342 Gene3D - 51 340 - -
Clacu03g0404 342 PRINTS Haem peroxidase superfamily signature 259 274 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Haem peroxidase superfamily signature 155 167 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Haem peroxidase superfamily signature 137 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Haem peroxidase superfamily signature 202 217 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 CDD secretory_peroxidase 48 337 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 313 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 136 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 257 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 155 170 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 201 213 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 117 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 PRINTS Plant peroxidase signature 273 290 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 202 212 IPR019793 -
Clacu03g0404 342 SUPERFAMILY Heme-dependent peroxidases 48 340 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 Gene3D Peroxidase, domain 2 180 318 - -
Clacu03g0404 342 FunFam Peroxidase 51 192 - -
Clacu03g0404 342 ProSiteProfiles Plant heme peroxidase family profile. 47 340 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu03g0404 342 FunFam Peroxidase 180 318 - -
Clacu03g0404 342 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601(InterPro)
Clacu03g0404 342 Pfam Peroxidase 66 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1929 Clacu-Chr2:32859701 Clacu03g0404 Clacu-Chr3:4475915 1.00E-104 dispersed
Clacu03g0404 Clacu-Chr3:4475915 Clacu09g0474 Clacu-Chr9:4114142 1.40E-66 dispersed
Clacu03g0404 Clacu-Chr3:4475915 Clacu01g1734 Clacu-Chr1:29503881 8.20E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0404 K00430 - csv:101208042 637.106