Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0421 ATGGCGTCAAGAATCAAAACTGGTGAGGATAGTGACGATAAAGATAGTAGCATCTGGGTTTTGGATCACCAGATGGACCAGCCAATGGAGGAGGAGGCTAGCCGGCTAAGAAATGCGCATCAGGAAAAGGGTCATTCTGTATTTAAAATTCTACAACTTGCATTCCAAAGCCTTGGAATTGTGTACGGAGATTTGGGCACCTCCCCTTTATATGTCTTCTATAACACGTTCCCCGATGGAGTTGAAAATACAGAGGACTTGATAGGAGCTCTGTCATTGATTATATACTCTCTGACTCTCATAACCCTTATCAAGTACGTATTTGTAGTCTGCAAGGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTATATTCATTGCTGAGCCGTCATGCTAAAATATTAACTATCCCTAACCATGACCTCAGTGATGAGAAGCTTACAACTTATAGTCGTTCTAAGTATCGGGAACAATCATTTGCTGCAAAAACTAAGAGATGGCTGGAAGGGCATCATTTTAAGAAACACGCAATTCTTGTTCTCGTTCTTGTTGGCTCCTGCATGGTGATTGGGGATGGAATCCTAACACCTGCTATTTCAGTTCTTTCTGCTGTTGGGGGGATCAACGTTGGTCATGCAAAAATAAGCAATGATGTAGCTGTTCTTGTTGCTATTGTCATACTTGTGTTCTTGTTTAGCATGCAACGTTATGGCACAGATAAAGTCGGTTGGCTTTTTGCCCCGGTAGTTTTTCTCTGGTTCACCTTAATAGGAGGCATCGGTATATTTAACATCTGCAAATATGATCACAGTGCCCTGAGAGCCTTTTCTCCAGTATATATATATCGGTACTTCAAACGGGGAGGGAAAGCTGGATGGACATCCCTTGGAGGGATCATGCTTAGTATTACAGGAACTGAAGCACTTTTTGCAGACCTATCCCATTTTCCAGTTTCCTCTATACAAATTGCTTTTACAGTAGTTGTATTTCCTTGCCTTCTTCTAGCCTACACTGGGCAAGTTGCCTATCTCATGAAAAACCCAGATTATGTTATTGGTGCCTTCTACCATTCAATCCCAGAAAGTATATATTGGCCAGTATTTCTTGTTGCAACTACCGCCGCTATCGTTGCAAGCCAAGCCACCATATCTGCAACCTTTTCATTAGTCAAGCAAGCTCTTGCACTTGGTTGCTTTCCAAGAGTTAAAGTTGTTCATACTTCTACGACTTTCCGTAATCAGATATATATTCCTGATATTAATTGGATCCTGATGATTCTTTGCATTGCCGTGACAGCTGGGTTCAAAAATCAAAGCCAAATTGGAAATGCTTCTGGGACAGCAGTGATTATAGTGATGTTGGTGACCACATTCCTCATGACTTTAATAATGATATTAGTGTGGCACTCCCACTGGTCTCTAGTTCTTCTCTTCATTTGCTTATCACTCCTTGTGGAGGGTTTCTACCTCTCCTCAGTTATTCAGAAGGTTTATCAAGGTGGGTGGGTCCCCTTGGTTATAGCAACAGCATTTTTCATCATCATGTACATTTGGCATTATGGTACAGCTAAACGTTATGAAATTGAGATGCACACTAAGGTTTCAATGGCATGGATTCTTAGCCTTGGCCCCAGTTTAGGACTTGTAAGGGTGCCTGGGATAGGACTTGTGTACACAGAACTAGCAAGTGGAGTCCCCCACATCTTTTCGCACTTCGTCACAAACTTACCCGCCATTCATTCGGTTGTGGTCTTTGTTTGTTTGAAGTGTTTGCCTGTCCACACAGTCCCAGAAGAAGAAAGATTTCTAGTAAAACGGATTGGACCTAAGAATTTTCGCATGTTTCGGTGTGTGGCTAGATATGGTTACAAAGACCTTCACAAGAAAGATGATGATTTTGAGAAGAAACTCTTTGATAGTATCTTCTTGTTTGTTCGACTCGAGTCATTGATGGATGGTGGATCTTCAGATTCGGACGTGTCTAGCCTACTTGATCAACAGGATGAAACAATTACAGAATATGCATTGAACACCATTAATTCAACTTGCTCAACTGTGGAATCAACAGGCCTACGAACAGCAGATTCGATTGAGCTTGCCAATTCTCCATTGCATCAGAACCAAGCCATCATAACACCTAGTCAAGAAAATGGTCAGACTGAGACAGACGAATTAGAATTCTTGGTTAGCTGTAAAAATGTTGGAGTTGTACACATTCTTGGAAATACAGTAATGAAAGCTAGGAGGGACTCCAGATTATGCAAAAGGATCGCAATTGATTATATATATGCATTTCTTAGGAAGATCTGCAGGGAGAACAGCGTGATGTTCAATGTTCCTCATGAGAGTTTGCTTAATGTTGGCCAAACATTCTATGTATGA 2382 41.35 MASRIKTGEDSDDKDSSIWVLDHQMDQPMEEEASRLRNAHQEKGHSVFKILQLAFQSLGIVYGDLGTSPLYVFYNTFPDGVENTEDLIGALSLIIYSLTLITLIKYVFVVCKANDNGQGGTFALYSLLSRHAKILTIPNHDLSDEKLTTYSRSKYREQSFAAKTKRWLEGHHFKKHAILVLVLVGSCMVIGDGILTPAISVLSAVGGINVGHAKISNDVAVLVAIVILVFLFSMQRYGTDKVGWLFAPVVFLWFTLIGGIGIFNICKYDHSALRAFSPVYIYRYFKRGGKAGWTSLGGIMLSITGTEALFADLSHFPVSSIQIAFTVVVFPCLLLAYTGQVAYLMKNPDYVIGAFYHSIPESIYWPVFLVATTAAIVASQATISATFSLVKQALALGCFPRVKVVHTSTTFRNQIYIPDINWILMILCIAVTAGFKNQSQIGNASGTAVIIVMLVTTFLMTLIMILVWHSHWSLVLLFICLSLLVEGFYLSSVIQKVYQGGWVPLVIATAFFIIMYIWHYGTAKRYEIEMHTKVSMAWILSLGPSLGLVRVPGIGLVYTELASGVPHIFSHFVTNLPAIHSVVVFVCLKCLPVHTVPEEERFLVKRIGPKNFRMFRCVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESLMDGGSSDSDVSSLLDQQDETITEYALNTINSTCSTVESTGLRTADSIELANSPLHQNQAIITPSQENGQTETDELEFLVSCKNVGVVHILGNTVMKARRDSRLCKRIAIDYIYAFLRKICRENSVMFNVPHESLLNVGQTFYV 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4621736 4626163 - ClG42_03g0042100.10 Clacu03g0421 244986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0421 793 Pfam K+ potassium transporter C-terminal domain 552 790 IPR053952 -
Clacu03g0421 793 NCBIfam potassium uptake protein 53 792 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu03g0421 793 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 41 792 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
Clacu03g0421 793 Pfam K+ potassium transporter integral membrane domain 53 540 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0421 Clacu-Chr3:4621736 Clacu05g1393 Clacu-Chr5:15414801 1.20E-198 dispersed
Clacu03g0421 Clacu-Chr3:4621736 Clacu03g0423 Clacu-Chr3:4631398 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0421 K03549 - csv:101217671 1386.7