Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0423 ATGGGCCGAGCTCTCCTCTGTGCTTTGTTTGTTGGGTCTGTGCAAGAGCCATGGATGGGGATAGGGGTAAGAAAAGTTCTGATTGATATTTGGTTTTTATTGCCTTCTTTTTGCTCTATCTGGTGTAGCTGCTTGGATTGCTCTGTTCACTCTGTTCATCGAAGCTTGAAGCTGGGATTCTGGGGCTTTGAATATTCAGTTCGGTGTCTGTTTCTCACTCAATCTTTGTCTCTTGGATCAGGGCTCTGTTGTTGGGTTTTATTGAGGATTTTCTACCTGGGCTTACTTCATTGGGCGTCTTTTCAAATTGAAACTAAGATGACTTCAAGAGTGGAAATCGATGAGGACTGTGAAATGAGGGGAAGTATGTGGGTTCTAGATCAGAAGCTCGATCAGCCAATGGATGAAGAAGCTGGGAGACTTAGTAATATGTACAAAGAGAAGAAATTCTCAGTATTGTTGCTTCTTCGACTTGCATATCAAAGCCTTGGAGTGGTTTATGGAGATTTGGGGACTTCTCCCCTGTACGTTTTCTACAATACATTTCCTCGTGGGATTTCTGATCCAGAGGATGTAGTTGGAGCACTTTCTTTGATTATATACTCACTCACTCTCATTCCACTCATAAAGTATGTATTTATCGTGTGTAAAGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTCTACTCCTTGCTGTGTCGTCATGCAAAAGTTAAAACTATTCCAAACCAACATCGAACTGACGAGGAGCTAACAACATATAGCCGTTCTAAATTTCATGAGCAATCATTTGCTGCTAAAACTAAAGGATGGCTTGAAAAACAATCATCCAGGAAGAATGCATTGCTCATTCTTGTCCTTGTTGGCACTTCCATGGTAGTTGGAGATGGAATTCTCACTCCTGCAATATCGGTTTTATCCGCTGCGGGAGGGATCAAAGTAAACCACCCCCATGTGAGCAGTGATGTAGTTGTGCTTGTTGCTGTTGTAATACTAGTAGGATTATTCAGCTTGCAACGCTATGGTACTGATAGAGTTGGTTGGCTCTTTGCTCCAGTTGTGCTACTATGGTTTCTATTAATTGGAGGTATAGGCATGTTCAACATCTGGAAATATGATAAAACCATTCTAAGAGCCTTTTCACCTGTGTATATTTTTCGCTATTTTAGAAGGCGAGGGATGGATGGTTGGACGTCCCTCGGAGGTGTACTGCTGAGTATAACAGGCACAGAGGCTCTATTTGCCGATCTGGCTCATTTTCGTGTAGCAGCTGTACAGATTGCTTTTACAGTAGTTGTTTTTCCTTGCCTTCTCTTGGCCTATTCTGGACAGGCTGCCTACCTTATTAACAATACGGACCATGTAGTTGATGCCTTCTATCGTTCAATCCCAGAAACCATATACTGGCCCGTGTTTGTTGTTGCAACTGCTGCTGCTGTAGTTGCTAGTCAAGCCACTATATCTGCAACATTTTCAATAATCAAGCAGGCTCTTGCTCATGGCTGCTTTCCAAGAGTTAAAGTTGTTCATACCTCAAAGAATTTCCTTGGTCAGATTTATGTTCCAGATATTAACTGGATCCTCATGATTCTTTGTATTGCTGTGACCGCAGGATTTAAGAATCAAAGTCAAATTGGAAATGCTTATGGGACAGCGGTTGTGGTAGTCATGCTTGTGACCACACTGCTCATGATTCTAATCATGATCTTGGTGTGGCGCTGTCATTGGATCATTGCCATGATTTTCACTGGACTGTCGCTTGTCGTGGAGTGCAGTTACTTTTCTGCTGTTCTCTTCAAGGTTGATCAAGGTGGCTGGGTCCCCCTTGTGATTGCTGGAGCTTTTCTTGTCATCATGTATGTGTGGCATTATGGTACTGTTAAACGATACGAATTCGAGCTGCACAGTAAAGTCTCAATGGCATGGGTTCTTGGGCTTGGTCCCAGTCTGGGACTAGTCCGTGTTCCTGGAATTGGACTTGTGTATACTGAGCTAGCAAGCGGCGTACCTCACATATTTTCCCATTTCATTACGAATCTGCCTGCCATCCATTCTGTTGTTGTGTTTGTCTGCGTGAAATATCTTCCAGTCTACACAGTGCCAGAGGAAGAAAGGTTCCTGGTAAAGCGGATAGGACCAAAGAATTTCCACATGTTTCGTTGTGTTGCAAGATACGGTTATAAAGACCTCCATAAAAAGGATGACGATTTTGAGAAAAAGCTTTTTGATAGCATCTTCCTCTTTGTCAGGCTTGAATCCATGATGGAAGGTTGTTCGGACTCTGATGAGTACAGTTTGTATGGCCAGCAAACTGAGCATTCTAGGGATGGCCTGTTGATTGGCAACCATGGAAATGCAGCTTCACCCAATGTGGACACAACATTCTCATCAGTTGACTCAATCGTGCCAGTTAGATCTCCGATGCATATGAATAGCACGGTAAGATCATCTGAGCAAGCAAGCAACCATACCGATAGCGATGAGATTGAATTCTTGATGAGGTGTAGAGATGCTGGGGTGGTGCACATACTGGGAAACACTGTAATTAGAGCAAGAAGGGAATCAAAATTCTACAAGAAGATAGCTGTTGATTACATATATGCCTTTCTTAGAAAGATTTGCAGGGAGAATAGTGTGATTTTCAATGTTCCTCATGAGAGTCTATTAAACGTTGGCCAAATTTTCTATGTATAG 2697 42.6 MGRALLCALFVGSVQEPWMGIGVRKVLIDIWFLLPSFCSIWCSCLDCSVHSVHRSLKLGFWGFEYSVRCLFLTQSLSLGSGLCCWVLLRIFYLGLLHWASFQIETKMTSRVEIDEDCEMRGSMWVLDQKLDQPMDEEAGRLSNMYKEKKFSVLLLLRLAYQSLGVVYGDLGTSPLYVFYNTFPRGISDPEDVVGALSLIIYSLTLIPLIKYVFIVCKANDNGQGGTFALYSLLCRHAKVKTIPNQHRTDEELTTYSRSKFHEQSFAAKTKGWLEKQSSRKNALLILVLVGTSMVVGDGILTPAISVLSAAGGIKVNHPHVSSDVVVLVAVVILVGLFSLQRYGTDRVGWLFAPVVLLWFLLIGGIGMFNIWKYDKTILRAFSPVYIFRYFRRRGMDGWTSLGGVLLSITGTEALFADLAHFRVAAVQIAFTVVVFPCLLLAYSGQAAYLINNTDHVVDAFYRSIPETIYWPVFVVATAAAVVASQATISATFSIIKQALAHGCFPRVKVVHTSKNFLGQIYVPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVVVMLVTTLLMILIMILVWRCHWIIAMIFTGLSLVVECSYFSAVLFKVDQGGWVPLVIAGAFLVIMYVWHYGTVKRYEFELHSKVSMAWVLGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESMMEGCSDSDEYSLYGQQTEHSRDGLLIGNHGNAASPNVDTTFSSVDSIVPVRSPMHMNSTVRSSEQASNHTDSDEIEFLMRCRDAGVVHILGNTVIRARRESKFYKKIAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4631398 4638742 - ClG42_03g0042300.10 Clacu03g0423 244988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0423 898 Pfam K+ potassium transporter C-terminal domain 657 895 IPR053952 -
Clacu03g0423 898 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 151 897 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
Clacu03g0423 898 NCBIfam potassium uptake protein 158 897 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu03g0423 898 Pfam K+ potassium transporter integral membrane domain 158 643 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0423 Clacu-Chr3:4631398 Clacu11g0182 Clacu-Chr11:1531686 1.10E-203 dispersed
Clacu03g0421 Clacu-Chr3:4621736 Clacu03g0423 Clacu-Chr3:4631398 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0423 K03549 - csv:101217915 1478.77