Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g0446 | ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAGTTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAACTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGTTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGTAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTAATCGGCAAACCTTGCTAA | 1146 | 44.07 | MASKSSHLLLILLFILSFISSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGVKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCLIGKPC | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4864770 | 4866787 | + | ClG42_03g0044600.10 | Clacu03g0446 | 245011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g0446 | 381 | Gene3D | - | 34 | 374 | IPR012334 | - | |
Clacu03g0446 | 381 | Pfam | Pectate lyase | 115 | 299 | IPR002022 | - | |
Clacu03g0446 | 381 | SMART | amb_all | 108 | 305 | IPR002022 | - | |
Clacu03g0446 | 381 | PANTHER | PECTATE LYASE 18-RELATED | 11 | 376 | IPR045032 | GO:0030570(InterPro) | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 80 | 105 | IPR018082 | - | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 116 | 132 | IPR018082 | - | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 322 | 346 | IPR018082 | - | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 282 | 301 | IPR018082 | - | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 260 | 279 | IPR018082 | - | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 180 | 201 | IPR018082 | - | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 57 | 74 | IPR018082 | - | |
Clacu03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 352 | 375 | IPR018082 | - | |
Clacu03g0446 | 381 | SUPERFAMILY | Pectin lyase-like | 34 | 372 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0446 | Clacu-Chr3:4864770 | Clacu09g1989 | Clacu-Chr9:34755578 | 1.30E-121 | dispersed | |
Clacu01g2249 | Clacu-Chr1:33634586 | Clacu03g0446 | Clacu-Chr3:4864770 | 4.20E-165 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g0446 | K01728 | - | csv:101211379 | 734.947 |