Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0446 ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAGTTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAACTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGTTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGTAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTAATCGGCAAACCTTGCTAA 1146 44.07 MASKSSHLLLILLFILSFISSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGVKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCLIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4864770 4866787 + ClG42_03g0044600.10 Clacu03g0446 245011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0446 381 Gene3D - 34 374 IPR012334 -
Clacu03g0446 381 Pfam Pectate lyase 115 299 IPR002022 -
Clacu03g0446 381 SMART amb_all 108 305 IPR002022 -
Clacu03g0446 381 PANTHER PECTATE LYASE 18-RELATED 11 376 IPR045032 GO:0030570(InterPro)
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Clacu03g0446 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Clacu03g0446 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0446 Clacu-Chr3:4864770 Clacu09g1989 Clacu-Chr9:34755578 1.30E-121 dispersed
Clacu01g2249 Clacu-Chr1:33634586 Clacu03g0446 Clacu-Chr3:4864770 4.20E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0446 K01728 - csv:101211379 734.947