Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0464 ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCAGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAGTATCATTAAGAAAGCTGAAGCTAGAATATCGGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGCGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1131 42.97 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5009546 5010676 - ClG42_03g0046400.10 Clacu03g0464 245029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0464 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Clacu03g0464 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Clacu03g0464 376 NCBIfam ATP synthase F1 subunit gamma 55 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 FunFam ATP synthase gamma chain, chloroplastic 123 246 - -
Clacu03g0464 376 FunFam ATP synthase gamma chain, chloroplastic 272 375 - -
Clacu03g0464 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Clacu03g0464 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 Gene3D - 123 246 - -
Clacu03g0464 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Clacu03g0464 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu03g0464 376 FunFam ATP synthase gamma chain, chloroplastic 54 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1242 Clacu-Chr4:26518745 Clacu03g0464 Clacu-Chr3:5009546 1.30E-18 transposed
Clacu10g0519 Clacu-Chr10:6286688 Clacu03g0464 Clacu-Chr3:5009546 2.50E-103 transposed
Clacu01g2272 Clacu-Chr1:33764821 Clacu03g0464 Clacu-Chr3:5009546 2.00E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0464 K02115 - csv:101214408 671.774