Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0485 ATGTTTGGAGCACATGGTTTCGAAGATCATCATGAGGATCTACTACTGGAGATGACCCAGAAAAATTTTGAATGTGAACTGGAAAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTTGGGAGAGGAACTTTGTGTTCTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATACAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCACATCCGGATGACAAGCAAAGAAAGCAGCTGAGCCGTGAGTTAGGACTCGAACCCCTCCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACACAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAGAGCAGAGAACATGAGGTACAAAGAAGCTCTAAGCAATACAAGTTGCCCTAATTGTGGAGGTCCTGCTGCTCTTGGTGAAATGTCCTTTGATGCCCAACATTTGAGAATTGACAATGCACATTTAAGAGACGAGATAGAGAGATTAAACAGTAGTAGCAAATATGGTGGGAAGGCATGGGGTTCTCATTCTCATATGGTTCCATGTGGAGGGCAGCTTGATCATCTTGGGGTTGGAAGATCATCATTAAAGCCCCAACAAGCTGATCATTTGTTAGGGGAAATGTATGGAGGAGTGGGAGAGACAATGTTAAAAAAGTCTGTGACTACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCTGTTTCAGCCATGGAAGAAGTTTGTAGAATGGCTCAAGCAGGTGAGCCGTTGTGGGTTACTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAGTACTTGAGGACTTACTCTACACAAATAGGCCCTAGAATTGTGGGGCTTAGCTTTGAAGCTTCAAGGCAAACCTCCATTCTTGCTTTCAATCATTTAAAACTTGTCCATGTTCTCATGGACGTGAATCAATGGTCAACCATATTTTGTGGGATTGTTTCAAGAGCATTGACACTTGAAGTCTTATCAACCGGAGTTGGTGGCGACTATAATGGAGCTCTGCATGTCATGACGGCCGAGTTTCAAGTTCCTTCTCCCCTGGTTCCGACTCGAGAAAATTACTTCGTGAGATACTGCAAGCAGCAGGCAGACCGGAGTTGGGCGGTGGTCGATGTTTCGCTTGATTATTTACGCCCCACACCTACTTCAAGGACTCGAAGAAGACCATCCGGTTGTTTAATCCAAGAACTACCAAATGGTTGCTCAAAGGTGACTTGGGTGGAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTGTACAAACGAGTGGTCTCATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGATCGACAGTGCCAACGCTTAACCAACTCCTCCTCTACCAACATTGCTGCACTAGATATTTGCGTGGTAACAGGGCAAGAGGGGAGGAAGAGCGTAATGAAGTTAGCAGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACACAACTGGACTACATTATCCACCATTGATTCCGACAATGTTCGAGTCATGGCGAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTCAATGCAGCAACTTCTTTCTGGATTCCAATTCCCCCTAACAGAGTCTTCCATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCGAACGGTGGATTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACCCAGGAAACTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTAATACTACAAGAGAGCTGCAGCGACGACATCAGCGGTTCCTACATAATCTACGCCCCAGTGGACACCGTCGCCATGAACATGGTCTTGAGCGGCGGAGACCCTGATTACGTGGCTCTCTTGCCATCCGGATTCGCCATTCTCCCTGATGGGCCGCCCATTGGGGCTGATGGGCCTTCAGGAATTCTCGAATTCGGATCCGGTGGTTCCTTGTTGACCGTTGCTTTTCAGATATTAGTGGATTCAGCTCCAACTGCCAAATTGTCTCTTGGGTCCGTGGCTACGGTTAACAGCCTCATCAAGTGCACGGTGGAGCGGATTAGAGCTGCACTCATGTGTGACCAACCCATGAATTAA 2214 46.52 MFGAHGFEDHHEDLLLEMTQKNFECELEKFGEDEFESRSVTDAMEAPLGEELCVLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDAQHLRIDNAHLRDEIERLNSSSKYGGKAWGSHSHMVPCGGQLDHLGVGRSSLKPQQADHLLGEMYGGVGETMLKKSVTTEIDKPVIVELAVSAMEEVCRMAQAGEPLWVTGENSMEMLNEDEYLRTYSTQIGPRIVGLSFEASRQTSILAFNHLKLVHVLMDVNQWSTIFCGIVSRALTLEVLSTGVGGDYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQADRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGCSKVTWVEHVEVDDRAVHNLYKRVVSCGLAFGAKRWMATLDRQCQRLTNSSSTNIAALDICVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDNVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRNQWDILSNGGLVQEMARIGNDRNPGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGADGPSGILEFGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPMN 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5170642 5178051 - ClG42_03g0048500.10 Clacu03g0485 245050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0485 737 Pfam START domain 254 472 IPR002913 GO:0008289(InterPro)
Clacu03g0485 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 732 IPR042160 -
Clacu03g0485 737 CDD START_ArGLABRA2_like 248 471 - -
Clacu03g0485 737 FunFam Homeobox-leucine zipper protein GLABRA 2 253 471 - -
Clacu03g0485 737 Coils Coil 166 186 - -
Clacu03g0485 737 Gene3D - 54 135 - -
Clacu03g0485 737 SMART START_1 253 472 IPR002913 GO:0008289(InterPro)
Clacu03g0485 737 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu03g0485 737 SUPERFAMILY Bet v1-like 499 727 - -
Clacu03g0485 737 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
Clacu03g0485 737 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289(InterPro)
Clacu03g0485 737 FunFam Homeobox-leucine zipper protein HDG1 50 134 - -
Clacu03g0485 737 SMART HOX_1 59 122 IPR001356 GO:0003677(InterPro)
Clacu03g0485 737 Coils Coil 112 147 - -
Clacu03g0485 737 SUPERFAMILY Bet v1-like 244 473 - -
Clacu03g0485 737 Gene3D - 311 473 IPR023393 -
Clacu03g0485 737 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677(InterPro)
Clacu03g0485 737 CDD homeodomain 60 119 IPR001356 GO:0003677(InterPro)
Clacu03g0485 737 Pfam Homeodomain 61 116 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0881 Clacu-Chr2:10808199 Clacu03g0485 Clacu-Chr3:5170642 1.80E-255 dispersed
Clacu03g0485 Clacu-Chr3:5170642 Clacu06g0005 Clacu-Chr6:307312 1.20E-187 dispersed
Clacu01g2287 Clacu-Chr1:33849681 Clacu03g0485 Clacu-Chr3:5170642 3.20E-254 wgd
Clacu02g0189 Clacu-Chr2:1769521 Clacu03g0485 Clacu-Chr3:5170642 2.60E-243 wgd
Clacu03g0485 Clacu-Chr3:5170642 Clacu05g1614 Clacu-Chr5:23368404 3.00E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47394 PF01852 START 1.30E-48 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0485 K09338 - csv:101212604 1348.95