Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0496 ATGCTGAATTTGGCCAATATTTTCGTCTTCCACCTCTGTTTCCATATCCATGGACACGCTCAAACTCTTTACATTTGCTTACCCAACAACAACTTCACTTCCAATAGCACCTACCAGTCCAGCCTTAATCTCCTCTTTTCAACTCTCTCCACCAACGGATTCTTCAATTCTTCCGTCGTCCGTACACCAAGCGACACCGTTTACGGCGTCTTCCAGTGCCGTGGAGACACCACCGACGGCTCCTGCCGTGATTGCGTAATGGAAGCCACCAGAAACATAGCCCATCAATTCTGTCCCTTTAGGGAAAGCGCTGTGGTTTGGTATGACGATTGTATGTTGCGTTATTCCGACCAATTTTTCTTTTCTCTTGTGTCTACTGAGCCAAATTACGTCTTAGATAGCCGCGTTAATATTGGGTTCGACACGGCCCGGTTTAACCAAGTGTTGATGGCCACGTTGACTGCCACGGCGGCTAATGACTCCTCAAATGGTGGGAAAAGAATTTTGTTTCCAATCTGTTATGTTCGTTACGAACTTTATCCATTTTACCAACTCACTAGGACTAACCCGGTAACAACTGATCCTCCACCACCACCTCCTTCCTCAGCTATAAATGAGATCAACAATGTGGAAGCTCTTCAATTTCATTTCAATCAATTGATGCTGCTACTAACAGTTTCTCAGAGGAAAATAGGGTGGGTGAAGGGGAGGCTTGAAAATGGACAAGAGATAGCAGTGAAAAGATTGTCAAGAGGATCCTTACAAGGTTCTGAAGAGTTCAAGAATGAGGTCATATTGGTTGCTAAGCTTCAACATAGAAATTTAGTAAGACTATTGGGATTTTGCTTGGAGGGTGGAGAAAAGATACTTATCTATGAATACATTCCCAACAAAAGCCTTGACTATTTCCTATTTGATACTGAGGGACAGAAAGTGTTAGATTGGTTGAGTCGACATAAGATCATGAATGGAATTGCTCGAGGAATGTTATATTTACATGAAGATTCTCGACTTAGAGTTATTCATTGTGATCTTAAAGCTAGCAATGTCTTGTTAGATGAGGAAATGAATCCAAAGATTTCGGATTTTGGTATGGCAAGAATTATTCAAATGGATGAAACTCAAAGAAATACACGTCGAATTGCTGGTACCTACGGTTACATGTCTCCTGAATATGCAATGCACGGAAACTTCTCTACCAAATCTGACGTGTATAGCTTTGGAGTGTTGATGTTGGAAATTATAACTGGAAAGAAAAACTACACCTTTTATTTGTCAGGTCCTGCGGATGACATGTTGAGCTACGCTTGGAAGCTATGGAATGATGAAACTCCATTAGATCTACTCGACTCGAGTTTAAGAGACAAATACTCAAGGAATATGGTACTTAGATGCATCCATATTGCTTTACTTTGTGTTCACGATGATCCTGGACGGAGACCTTCCATGGCATCCATTGTTCTTATGTTGAATAGTTATTCGGTTACTTTGCCTGAACCTAATGAGCCAACGTTCTTCAAGAGCAATAGAAACAATGAGATTGCCATAGATGGTGATCAATCCAATAGACCGTCTTCCAATACAGTATCTGTAACTGAAATGTACCCACGATGA 1614 41.33 MLNLANIFVFHLCFHIHGHAQTLYICLPNNNFTSNSTYQSSLNLLFSTLSTNGFFNSSVVRTPSDTVYGVFQCRGDTTDGSCRDCVMEATRNIAHQFCPFRESAVVWYDDCMLRYSDQFFFSLVSTEPNYVLDSRVNIGFDTARFNQVLMATLTATAANDSSNGGKRILFPICYVRYELYPFYQLTRTNPVTTDPPPPPPSSAINEINNVEALQFHFNQLMLLLTVSQRKIGWVKGRLENGQEIAVKRLSRGSLQGSEEFKNEVILVAKLQHRNLVRLLGFCLEGGEKILIYEYIPNKSLDYFLFDTEGQKVLDWLSRHKIMNGIARGMLYLHEDSRLRVIHCDLKASNVLLDEEMNPKISDFGMARIIQMDETQRNTRRIAGTYGYMSPEYAMHGNFSTKSDVYSFGVLMLEIITGKKNYTFYLSGPADDMLSYAWKLWNDETPLDLLDSSLRDKYSRNMVLRCIHIALLCVHDDPGRRPSMASIVLMLNSYSVTLPEPNEPTFFKSNRNNEIAIDGDQSNRPSSNTVSVTEMYPR 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5257739 5260291 + ClG42_03g0049600.10 Clacu03g0496 245061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0496 537 ProSiteProfiles Gnk2-homologous domain profile. 20 120 IPR002902 -
Clacu03g0496 537 MobiDBLite consensus disorder prediction 516 537 - -
Clacu03g0496 537 SMART serkin_6 225 494 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0496 537 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 53 506 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu03g0496 537 FunFam Uncharacterized protein 228 294 - -
Clacu03g0496 537 FunFam cysteine-rich receptor-like protein kinase 10 295 497 - -
Clacu03g0496 537 CDD STKc_IRAK 235 491 - -
Clacu03g0496 537 Gene3D Transferase(Phosphotransferase) domain 1 295 503 - -
Clacu03g0496 537 Pfam Salt stress response/antifungal 26 118 IPR002902 -
Clacu03g0496 537 Gene3D - 19 120 IPR038408 -
Clacu03g0496 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0496 537 Pfam Protein tyrosine and serine/threonine kinase 238 488 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0496 537 ProSiteProfiles Protein kinase domain profile. 220 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0496 537 Gene3D Phosphorylase Kinase; domain 1 204 294 - -
Clacu03g0496 537 SUPERFAMILY Protein kinase-like (PK-like) 235 520 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0496 Clacu-Chr3:5257739 Clacu03g0506 Clacu-Chr3:5318772 1.40E-102 dispersed
Clacu03g0499 Clacu-Chr3:5277633 Clacu03g0496 Clacu-Chr3:5257739 4.10E-25 dispersed
Clacu07g0591 Clacu-Chr7:8821436 Clacu03g0496 Clacu-Chr3:5257739 7.00E-06 dispersed
Clacu03g0496 Clacu-Chr3:5257739 Clacu03g0498 Clacu-Chr3:5267319 9.20E-182 proximal
Clacu01g2299 Clacu-Chr1:33924483 Clacu03g0496 Clacu-Chr3:5257739 5.30E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73409 PF07714 PK_Tyr_Ser-Thr 5.60E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0496 - - - 0.0