Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0498 ATGCTCAATTTTCTTACTTTCCTCTTCTTCCTCAATCTCCTTACCCATGGAAACGCTCAGACCCCAGTTCCTTACCCATATCGCAGTTGCTTGTCCGGCAATTTCACTCACAACAGCACCTATCAGTCCAACCTCAATCTTCTCTTTTCAAATCTCTCCACCAACGGCCCCCCAAGAAACAGATTCTTCAATACTTCCGTCGGCCGACCCCCAAACGACGCCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGTCACCGACGCCGTCTGTCGTACTTTCTTAGCCACCGCAACCAGAGACGCAGAGCGGCTGTACTGTCCTCTAAGAAATGGCGCTGTGATTTGGTACGACGAAATCATATTCCGCTATTCCGACCAACCTTTCTTTTCCACGGTTTCCTCAAACCCAAGTATGCAGTTACAGAATACGGGTAATATAGACGTCGACAAGGCTCGATTCAACCAACTAGTCATGTCCACGTTGAGAGCCACCGCGGCTCAGGCGGCGAACGCCTCTTTGGTGGGCAATTTGTTTGCGACCCAGATGGCTAATTTTACAGAAGACCTAACCCTTTACACATTAGCTCAGTGTACCGGCGATTTGTCCAATACGGATTGCGAAGGATGCTTACGCCAAGCTACCAACTCAATTCCAAGTTGTTGTAGTAATAAACGAGGCGGTCGCGTTCTGCTTCCCAGCTGTTATGTTCGTTACGAAGTTTACATGTTTTACGAATTAACGCCGACGAATTCCTTACCGCCTCCGGCAACACCGCCTCTTCTTCCTTCTTCTCCTCCGCCAGGGGAAAGAAGGTCCTCAACGGTGTTAATTGTGGCCATTGTAGCTCCAATTACTGTCTCCATACTGCTCTTTGTAGTGGGATGTTGTTTCCTGCGCCTGCGAGCGAAGAACAGATACTCTGCTGCGAAGGAAGATAGTGTTGTTAATGAGATGACGACTGTGGAATCTCTGCAATTTGATTTCAAAACAATCGAAGCTGCTACTAACAAATTCTCAGAGGAAAACAGGTTGGGAGAAGGTGGATTTGGTGCTGTCTTCAAGGGTAGGCTTGAAAATGGACAAGAGATAGCAGTGAAGAGGCTGTCAAGAGGATCTTTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTTGTAAGGTTATTGGGATTCTGCTTGGAGGGGGATGAAAAGATTCTCATCTATGAATACATTCCCAACAAAAGCCTTGACTTTTTCTTGTTTGATCTAGAGGGACAGAGGCAGTTGGATTGGTTGAAACGATATAAAATCATCAATGGAATTGCTCGAGGAATATTGTATCTGCATGAAGATTCTCGTCTTAGAATTATTCACCGTGATCTTAAAGCGAGTAACATCTTGTTAGACAAAGATATGAATGCAAAAATTTCAGACTTTGGCATGGCAAGGATTATTCAAATGGATCAAACCCAAGGAAATACTAGTAGGATTGTTGGTACCTATGGTTACATGTCTCCTGAGTATGCAATGCACGGAAATTTCTCAATGAAATCTGATGTGTATAGCTTTGGAGTGTTAGTGTTAGAGATTTTAAGTGGTAAGAAAAACAACACCTTTTACTTGTCAGATCTTGCCGAAGACATTTTGACATATGCTTGGAAATTGTGGAAGGATGGAACGCCATTAGAGTTATTGGATCCAATGTTGAGAGATAATTACTCGAGAAATGAGGTGGTTAGATGCATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTAACAGCAGACCTTCCATGGCTTCCATTGTTCTTATGCTTAATAGTTATTCCGTTACTTTGCCATTGCCTGAAGAGCCAGCATTCTTCATGCGTAGTAAAGACAATCACATTACAATGGGCAGCGATCATTCTACCAATAAGTCTATTCAGTTTTCTGTTAACGAAACATCTATATCTGAGTTGCATCCACGATGA 1983 43.57 MLNFLTFLFFLNLLTHGNAQTPVPYPYRSCLSGNFTHNSTYQSNLNLLFSNLSTNGPPRNRFFNTSVGRPPNDAVYGLFQCRGDVTDAVCRTFLATATRDAERLYCPLRNGAVIWYDEIIFRYSDQPFFSTVSSNPSMQLQNTGNIDVDKARFNQLVMSTLRATAAQAANASLVGNLFATQMANFTEDLTLYTLAQCTGDLSNTDCEGCLRQATNSIPSCCSNKRGGRVLLPSCYVRYEVYMFYELTPTNSLPPPATPPLLPSSPPPGERRSSTVLIVAIVAPITVSILLFVVGCCFLRLRAKNRYSAAKEDSVVNEMTTVESLQFDFKTIEAATNKFSEENRLGEGGFGAVFKGRLENGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGDEKILIYEYIPNKSLDFFLFDLEGQRQLDWLKRYKIINGIARGILYLHEDSRLRIIHRDLKASNILLDKDMNAKISDFGMARIIQMDQTQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNNTFYLSDLAEDILTYAWKLWKDGTPLELLDPMLRDNYSRNEVVRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPLPEEPAFFMRSKDNHITMGSDHSTNKSIQFSVNETSISELHPR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5267319 5270350 + ClG42_03g0049800.10 Clacu03g0498 245063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0498 660 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Clacu03g0498 660 Gene3D - 135 243 IPR038408 -
Clacu03g0498 660 Gene3D - 24 128 IPR038408 -
Clacu03g0498 660 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Clacu03g0498 660 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0498 660 Pfam Salt stress response/antifungal 33 126 IPR002902 -
Clacu03g0498 660 Pfam Salt stress response/antifungal 150 240 IPR002902 -
Clacu03g0498 660 SUPERFAMILY Protein kinase-like (PK-like) 323 642 IPR011009 -
Clacu03g0498 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 157 625 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Clacu03g0498 660 ProSiteProfiles Gnk2-homologous domain profile. 134 243 IPR002902 -
Clacu03g0498 660 FunFam cysteine-rich receptor-like protein kinase 10 414 616 - -
Clacu03g0498 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0498 660 FunFam Cysteine-rich receptor-like protein kinase 25 136 243 - -
Clacu03g0498 660 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Clacu03g0498 660 CDD STKc_IRAK 344 610 - -
Clacu03g0498 660 FunFam Cysteine-rich receptor-like protein kinase 10 300 413 - -
Clacu03g0498 660 Gene3D Transferase(Phosphotransferase) domain 1 414 616 - -
Clacu03g0498 660 SMART serkin_6 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0498 660 Pfam Protein tyrosine and serine/threonine kinase 341 607 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2306 Clacu-Chr1:33971999 Clacu03g0498 Clacu-Chr3:5267319 1.60E-132 dispersed
Clacu01g2307 Clacu-Chr1:33978162 Clacu03g0498 Clacu-Chr3:5267319 2.10E-119 dispersed
Clacu02g0177 Clacu-Chr2:1676785 Clacu03g0498 Clacu-Chr3:5267319 3.50E-30 dispersed
Clacu03g0498 Clacu-Chr3:5267319 Clacu03g0507 Clacu-Chr3:5327185 1.00E-134 dispersed
Clacu03g0500 Clacu-Chr3:5281186 Clacu03g0498 Clacu-Chr3:5267319 5.60E-48 dispersed
Clacu03g0504 Clacu-Chr3:5295919 Clacu03g0498 Clacu-Chr3:5267319 9.30E-20 dispersed
Clacu05g0446 Clacu-Chr5:3742659 Clacu03g0498 Clacu-Chr3:5267319 3.10E-09 dispersed
Clacu06g0740 Clacu-Chr6:8651821 Clacu03g0498 Clacu-Chr3:5267319 8.70E-12 dispersed
Clacu03g0496 Clacu-Chr3:5257739 Clacu03g0498 Clacu-Chr3:5267319 9.20E-182 proximal
Clacu03g0498 Clacu-Chr3:5267319 Clacu03g0499 Clacu-Chr3:5277633 1.40E-49 tandem
Clacu01g0649 Clacu-Chr1:6939254 Clacu03g0498 Clacu-Chr3:5267319 1.20E-13 transposed
Clacu06g0054 Clacu-Chr6:714413 Clacu03g0498 Clacu-Chr3:5267319 1.20E-13 transposed
Clacu01g2308 Clacu-Chr1:33983022 Clacu03g0498 Clacu-Chr3:5267319 5.20E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73410 PF07714 PK_Tyr_Ser-Thr 1.30E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0498 - - - 0.0