Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0503 ATGTTCCACTCAAGCCTTCTCTTTTCTATCATCATCTTCTCCTTCTTCCTCTTCATCAGCCCTGCAATTCCTCAGCCAAATACCAATTGTTCAAACGACAATGACAATTGCACAGCCAGCAGCACCTACAGAGCCACAATTATTACACCCAATTGTAATCTTGGCTATGAGATTATCAATTTCTTTGACTCTGCAGCTGTTTCCAGAGTTTCTCGGTCGACCTCGCCGCCGACACCGCCATCCCCTCTCTTGCCACTCTCACCTCCCTCTCTTTCACCAAATACAACAACCAATGTCAAAGAAAAGGAGTCGAAGAGATTGAAGATTGTCATCATTATAGTTCTCCCAGTGGCTGTTGTAGTTGTGGTATTAATTGTCAGCATCTTCATCTTTTTAAGAGCAAGAAAACAAAGGGATGGAGTTGCAAGTTTACAAGTGGATGACACTGCAGATTTTGAAACTTTAGTATTTGACATCAGTACTATAAGAACTGCAATAGATGACTTCTCAGATGAAAATTATATCGGACAAGGTAGATTTGGAGCTGTTTACAAGGGAAGCCTTGTTAATGGACAAGAAATAGCAGTGAAGTTTCTCAAAAAGAACCCCATGGAAGGAGAGAGTGAGTTTAAGAATGAAGTCCTGTCAATGGCCAAACTTCAACACCGGAATTTAGTTCGGTTTCTCGGTTTCTGCCTCCACAAACACATGATGATTTTCGTGTCCGAGTTCGTGCAAAACTCAAGTCTTGATAAATTCATATTTGAGCCATTGAAAGGTCAAGATTTGGACTGGGGAACACGCTACAAAATCATTCAAGGCATTGCTACAGGCCTTGTTTATCTTCATCAAGATTCTCAAATTAAAGTTGTTCATAGAGATCTCAAAGCTACAAATATTTTATTAGATGCACAAATGAATCCTAAAATTTCTGATTTTTTCATGGTAAAGTTGTTTCAAGAAGGTCCAGCTCAAGAAAATACATGTCTGGGATACATGGCTCCGGAATATCTTGTCTCCGGAATGTCGTCAAAAAAGTCGGATGTGTTTAGTTTCGGTGTGTTAGTTATTGAGATTGTGACTGGCCAAAAAATCACATCTTTCTGCGAGGAAAATGAGGGAAAGGACATATATGATCTTATATGCTATGTATGGAGAAACTGGAGGGCAGGAACAATACTAAATGTTGTAGATCCTATATTGCGAGGTGGGTCAAGTAATGAAATAAAGAAATGTATCAACATTGGATTGCTTTGTGCTCAAGTAAATAAAGCTAACAGGCCAACTATGGAAACAGTACTTCTCATGCTTAATAGTGACACAATCACTCTACCAATACTTTCTCCGCTAGGTGATTACATGAATAAGAGTCCCAAATCGGACATGTCTTCTTCACAAGAGAGGTCTTCTTCCCATGTAATAGAGATAGAATGA 1434 39.33 MFHSSLLFSIIIFSFFLFISPAIPQPNTNCSNDNDNCTASSTYRATIITPNCNLGYEIINFFDSAAVSRVSRSTSPPTPPSPLLPLSPPSLSPNTTTNVKEKESKRLKIVIIIVLPVAVVVVVLIVSIFIFLRARKQRDGVASLQVDDTADFETLVFDISTIRTAIDDFSDENYIGQGRFGAVYKGSLVNGQEIAVKFLKKNPMEGESEFKNEVLSMAKLQHRNLVRFLGFCLHKHMMIFVSEFVQNSSLDKFIFEPLKGQDLDWGTRYKIIQGIATGLVYLHQDSQIKVVHRDLKATNILLDAQMNPKISDFFMVKLFQEGPAQENTCLGYMAPEYLVSGMSSKKSDVFSFGVLVIEIVTGQKITSFCEENEGKDIYDLICYVWRNWRAGTILNVVDPILRGGSSNEIKKCINIGLLCAQVNKANRPTMETVLLMLNSDTITLPILSPLGDYMNKSPKSDMSSSQERSSSHVIEIE 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5293295 5295365 + ClG42_03g0050300.10 Clacu03g0503 245068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0503 477 Gene3D Transferase(Phosphotransferase) domain 1 245 443 - -
Clacu03g0503 477 ProSiteProfiles Protein kinase domain profile. 169 447 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0503 477 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524(InterPro)
Clacu03g0503 477 SUPERFAMILY Protein kinase-like (PK-like) 149 437 IPR011009 -
Clacu03g0503 477 MobiDBLite consensus disorder prediction 72 99 - -
Clacu03g0503 477 MobiDBLite consensus disorder prediction 455 477 - -
Clacu03g0503 477 MobiDBLite consensus disorder prediction 75 89 - -
Clacu03g0503 477 Pfam Protein tyrosine and serine/threonine kinase 173 385 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0503 477 Gene3D Phosphorylase Kinase; domain 1 133 244 - -
Clacu03g0503 477 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 444 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu03g0503 477 SMART serkin_6 169 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0503 477 MobiDBLite consensus disorder prediction 457 471 - -
Clacu03g0503 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0503 477 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 245 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0503 Clacu-Chr3:5293295 Clacu03g0506 Clacu-Chr3:5318772 3.20E-93 dispersed
Clacu03g0502 Clacu-Chr3:5288152 Clacu03g0503 Clacu-Chr3:5293295 1.10E-155 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73412 PF07714 PK_Tyr_Ser-Thr 2.80E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0503 - - - 0.0