Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0509 ATGGGGTCGCCTGAAATTACGGATTGGGTGTTCGATTACGGTATGATTGAGGACATTCCTGTCCCCGGTGGTGACCTACCTTCGCTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCATCCTTCAGGGCAGACTTCGATGACCCACTTGGAATGGCAGACGATGTAAAAGAATCTGGGTCCAGGAAAAGGATGAGCTCTGGATCAAATGCATTTGAGTCCAAGGCACATAAAGAAAAAATGAGGAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGTTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAGCTGAAGGAGTCTAATGAGAGTTCTTTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTACGGGACGAAAAACAGAGGCTGAAAGAAGCAAAAGACAGCCTTGAAAAGAAAATGAAGGCCTTCAATACACAACCAACCTTCTTGCCTCACCCTCCTGCAATTCCTGCTGCATTTGCTTCTCCAAATCAGGTTGTTGGGGGGAAATTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCGGTTTATGCCTCCGGGTGCCATTGATACATCACAAGACCATGTTCTTCGGCCACCAGTCGCCTGA 705 45.53 MGSPEITDWVFDYGMIEDIPVPGGDLPSLDLPSFTLPSCDFTASFRADFDDPLGMADDVKESGSRKRMSSGSNAFESKAHKEKMRRDKLNDRFLELNSILNHGRPPKIDKSVILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDSLEKKMKAFNTQPTFLPHPPAIPAAFASPNQVVGGKLVPVIGYPGVSMWRFMPPGAIDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5334365 5337516 - ClG42_03g0050900.10 Clacu03g0509 245074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0509 234 PANTHER BHLH TRANSCRIPTION FACTOR 8 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Clacu03g0509 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 136 IPR036638 GO:0046983(InterPro)
Clacu03g0509 234 CDD bHLH_AtILR3_like 78 153 - -
Clacu03g0509 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983(InterPro)
Clacu03g0509 234 SMART finulus 79 130 IPR011598 GO:0046983(InterPro)
Clacu03g0509 234 Pfam Helix-loop-helix DNA-binding domain 77 125 IPR011598 GO:0046983(InterPro)
Clacu03g0509 234 MobiDBLite consensus disorder prediction 56 82 - -
Clacu03g0509 234 Coils Coil 121 176 - -
Clacu03g0509 234 Gene3D - 76 150 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0509 Clacu-Chr3:5334365 Clacu10g0558 Clacu-Chr10:6745905 4.40E-56 dispersed
Clacu03g0509 Clacu-Chr3:5334365 Clacu05g1640 Clacu-Chr5:24311359 1.60E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47396 PF00010 HLH 4.20E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0509 - - - 0.0