Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0531 ATGATAATGAAATGCTGTATGAATCTTCTTCCTCCTAAACGGGCTTTCTTCTTCATTTCGTTGTTTTTGGTAATTTTTGTTGGTAGCCAATTTAGCGTTGGCCTTGAGAATTCGAATTCTACCATTCAAATCATCAAAGATGGAGATCGGTTGACATCCAGCGACAATAATTTCGTTCTTGGATTCTTCGGTTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTATAATAAAATTCCTCAATTTACCCTCGTTTGGGTTGCAAATAGAAACCAACCCCTTAACGACAACACAGGAACCTTAGCCCTCGACCGCCGTGGAAACCTCCTCCTTTTCACCTCCAAACAAACCATATCTCTTTGGTCTACAAACGCTACCATTCAATCAAACGACGACGTGTTGATTAAGCTTTGGAATACGGGAAATCTCGCCCTGATTGAACGACAAAGCCAAAAGGTTATATGGCAAAGCTTTGACTATCCATCTCATGTCTTTCTTCCCTACATGAAATTGGGGTTGAACTGGCGGACCGGGATTAACTGGTTCCTAACTTCATGGAAGGCGCAGGACGATCCGAGAACTGGGAACTTCAGTTGTCGGATAGACCCAACAGGGTATCCGCAATTAATTTTGTACAAGGGGAATGATCCGCGGTGGCGGATTGGATCATGGACGGGGCACAAATGGTCTGGAGTACCTGAAATGACAAGGTCATTTATATTCAACACAACCTATATCGACAACACAGAGGAGATTTCCATAATGGACAGTGTCACAAACGACACGGTTTTAAGCAGCATGAGTCTAGACGAATCCGGTTTGTTGCATCGGTCCATGTGGAATGAAGAACAACAAAAGTGGAAAGATTATTGGACGGGTCCGACCGAGTGGTGCGACAGCTACAATAGATGCTATCCAAACACTAACTGTGACCAGTACGACACGGAGCAGTTCTATTGCAAGTGCTTGCCTGGCTTCGAACCACGATCGAACCAAAGTTGGTTACGGAGAGATCCGTCGGGTGGGTGCATCATGAAGAGGCCCAACGCCATGTGTCGTAGTGGAGAGGGATTTGTGAGGGTGTCACGTGTGAAGGTCCCGGATACGTCGATGGCACGTGCAGATTTGAGTATGAGTTTGGACGCGTGCGCACAAGCATGTGTAAATGATTGTAACTGTACGGCTTACACGAGCGCAAATGAGGCGACGGGGAGCGGGTGCGTGATGTGGTATGGAGATTTGATAGACACACGGACCTTTGCCAACACGGGTCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAATATAATCCACAAAATTCAAATCCTCATCCAACAAAGAAGGTGATAGTAATTGTTGTTGCATCTTTTGTTGCATTGGTGTTACTCGTGACCTCACTAATTTGTTTATGGAAAATGATTAGAAAAAGAAGGGAGAGATCCATGAGTCTATCTAATAACTTTGAGGTCTCTCCAAATTCAAAGGAATTTGATGAAAGTAGAACAAATTCAGATTTGCCTATATTTGACTTGTTGACTATAGCAAAGGCAACCGATGATTTTTCATTTAATAACAAGCTTGGAAAAGGTGGCTTTGGCACAGTTTACAAGGGCAAGCTTATGAATGGAGAGGAAATTGCAGTTAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACATTAATTGCAAAGCTCCAACATAGAAACCTCGTCAGAATTTTAGGCTATTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTACCAAACAAAAGCTTGGACTATTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTCAATTGGAAAAAACGTTTTGAAATTATATGTGGCATCGCACGAGGAATCTTATATCTTCATCAAGATTCAAGGTTGAAAATCATTCATCGAGATTTGAAGGCCAGCAATATACTACTGGATGCTGATTTGAATCCCAAAATCGCAGATTTTGGCATGGCAAGGATAGTTGGCCAAGATCAAATTCAAGCAAACACAAATCGCATCGTGGGAACATATGGTTATATGTCACCAGAGTATGCAATGGAAGGCCTATTTTCAGTGAAATCTGATGTTTATAGCTTTGGAGTTTTGGTGCTAGAGGTGATTACAGGCAAAAAGAACACTGGCTGTATATCCAACTACGTAAATTTGGTTGGACAAGTTTGGGAGCTCTGGAACTTGGACAATGCAATGGAATTAGTGGACTCAAGTTTGGAAGAAGGATCAAGTTGTGAATACGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTTCAAGAGGATCCGACTAACCGTCCGACCATGTCGAATGTGGTTTTCATGTTGGAGAATGAAGTGAGTATTCCTTCTCCAAAGAAACCTGCTTTCATTTTAAAGAGGAAAAGCAACCATGGAGATCCATCCACCAGTACTGAAGGAGCCAACTCCAGTACTACTGAGGGAGCCAACTCTCTAAATGATCTAACAATTTCCATAATCGATGCTCGTTAA 2553 42.22 MIMKCCMNLLPPKRAFFFISLFLVIFVGSQFSVGLENSNSTIQIIKDGDRLTSSDNNFVLGFFGFNNSTTRRYVGIWYNKIPQFTLVWVANRNQPLNDNTGTLALDRRGNLLLFTSKQTISLWSTNATIQSNDDVLIKLWNTGNLALIERQSQKVIWQSFDYPSHVFLPYMKLGLNWRTGINWFLTSWKAQDDPRTGNFSCRIDPTGYPQLILYKGNDPRWRIGSWTGHKWSGVPEMTRSFIFNTTYIDNTEEISIMDSVTNDTVLSSMSLDESGLLHRSMWNEEQQKWKDYWTGPTEWCDSYNRCYPNTNCDQYDTEQFYCKCLPGFEPRSNQSWLRRDPSGGCIMKRPNAMCRSGEGFVRVSRVKVPDTSMARADLSMSLDACAQACVNDCNCTAYTSANEATGSGCVMWYGDLIDTRTFANTGQDLYVRVDAIELAQYNPQNSNPHPTKKVIVIVVASFVALVLLVTSLICLWKMIRKRRERSMSLSNNFEVSPNSKEFDESRTNSDLPIFDLLTIAKATDDFSFNNKLGKGGFGTVYKGKLMNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDYFIFDESKRALLNWKKRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIVGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEVITGKKNTGCISNYVNLVGQVWELWNLDNAMELVDSSLEEGSSCEYEIMRCLQIGLLCVQEDPTNRPTMSNVVFMLENEVSIPSPKKPAFILKRKSNHGDPSTSTEGANSSTTEGANSLNDLTISIIDAR 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5525118 5529629 - ClG42_03g0053100.10 Clacu03g0531 245096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0531 850 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524(InterPro)
Clacu03g0531 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 228 IPR036426 -
Clacu03g0531 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 32 160 - -
Clacu03g0531 850 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Clacu03g0531 850 MobiDBLite consensus disorder prediction 817 836 - -
Clacu03g0531 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 803 - -
Clacu03g0531 850 Pfam PAN-like domain 354 419 IPR003609 -
Clacu03g0531 850 MobiDBLite consensus disorder prediction 812 836 - -
Clacu03g0531 850 Gene3D Phosphorylase Kinase; domain 1 500 601 - -
Clacu03g0531 850 ProSiteProfiles Bulb-type lectin domain profile. 36 160 IPR001480 -
Clacu03g0531 850 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 26 809 - -
Clacu03g0531 850 Gene3D - 36 160 IPR036426 -
Clacu03g0531 850 PIRSF SRK 7 850 IPR024171 GO:0004674(InterPro)
Clacu03g0531 850 SMART blect_4 42 163 IPR001480 -
Clacu03g0531 850 ProSiteProfiles Protein kinase domain profile. 526 810 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0531 850 SMART serkin_6 526 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0531 850 CDD STKc_IRAK 532 798 - -
Clacu03g0531 850 Pfam Protein tyrosine and serine/threonine kinase 527 793 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0531 850 ProSiteProfiles PAN/Apple domain profile. 354 434 IPR003609 -
Clacu03g0531 850 CDD B_lectin 43 163 IPR001480 -
Clacu03g0531 850 SMART ntp_6 355 433 IPR003609 -
Clacu03g0531 850 Pfam S-locus glycoprotein domain 221 331 IPR000858 GO:0048544(InterPro)
Clacu03g0531 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 491 601 - -
Clacu03g0531 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0531 850 SUPERFAMILY Protein kinase-like (PK-like) 502 796 IPR011009 -
Clacu03g0531 850 CDD PAN_AP_plant 355 433 - -
Clacu03g0531 850 Pfam D-mannose binding lectin 85 189 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0531 Clacu-Chr3:5525118 Clacu03g0535 Clacu-Chr3:5565782 9.10E-192 dispersed
Clacu03g0531 Clacu-Chr3:5525118 Clacu03g0532 Clacu-Chr3:5538798 0.00E+00 tandem
Clacu01g2319 Clacu-Chr1:34047119 Clacu03g0531 Clacu-Chr3:5525118 3.40E-178 wgd
Clacu10g0613 Clacu-Chr10:8300398 Clacu03g0531 Clacu-Chr3:5525118 2.20E-189 wgd
Clacu02g0151 Clacu-Chr2:1523965 Clacu03g0531 Clacu-Chr3:5525118 9.40E-117 wgd
Clacu03g0531 Clacu-Chr3:5525118 Clacu05g1668 Clacu-Chr5:25126069 4.40E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73415 PF07714 PK_Tyr_Ser-Thr 9.00E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0531 - - - 0.0