Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0533 ATGGGAGAACGGATTTGCAGGTGCAAGCTTTCAACTCTTTTAATATTTTGGACGACCATAGCTCTGTTTCCAAGAAAATCATTAGCAATCGATAGTATAAAAGCAGGGGAATCCATTATTGGCAGTACCCAGATATTAGTTTCAACGGCACAGAACTTTGTGTTGGGAATCTTCAATCCCCAGGGCTCAAAATTTCAGTATTTGGGAATATGGTTCAACAACATCCCACAGACTGTCGTGTGGGTAGCAAACAGAGACAACCCACTTGTAACTTCCTCTGGAAAATTAACAGTCAACGGAGAAGGAAACATCATTCTTCTCAACGAAACAGGTGGAGTCTTATGGTCTTCTCCTTCTCCAGGATCAATGAAACAACCCGTCGCTCAGCTGCTAAACACAGGTAATTTGGTTTTAGGAGAATCTGGGTCTGAGAATTATTTATGGCAGAGTTTTGATTATCCTTCTGATACTCTGTTACCGGGAATGAAACTGGGTTGGGACTCGAAAACCGGTCTGAACCGGAAGTTAACATCTTGGAAAAGCTCGAACGATCCCTCGTCTGGGGCTTTCACTTACAGTATTGAAACGGATGGGCTTCCCCAATTTGTAATTCGCGAAGGACCCACCATAACTTTTCGAGGCGGCCCATGGTACGGTAATAGATTTAGTGGAAGTGGTGCACTCAGAGATACCGCAATTTATTCCCCAAAGTTCGATTATAACGCTACCGAAGCTTTCTTTTCATATGATGCTGCGGATAATCTCTCTGTAAGACTGGTATTGAACGCGGCTGGGTTTTTTCAACAGTTTTATTGGGTCGATGATGGAAAATATTGGAACCCTTTGTATATAATGCCAGGAGATCGCTGTGACGTCTATGGACTTTGTGGGGATTTTGGAGTTTGTACATTTTCGCTCACAGCAGAATGTGATTGTATGGCTGGGTTTGAACCCAAATCGCCTAACGATTGGGAAAGGTATAGATGGTCTGATGGTTGTGTTAGAAGGGACCATCGCACCTGTGGAAATGGAGAGGGGTTTAAAAGAATTAGCAGTGTGAAATTGCCAGATTCTTCAGGGAATTTGGTGAATGTTAATACAAGCATTGTTGATTGTGAGGCGGCGTGCTTAAACAACTGCTCTTGCCTGGCTTATGGAATAATGGAGCTTCCAACAGGCGGCTATGGCTGCGTTACCTGGTTTCATAAACTGGTGGATGTTAAATTCGTTCTTGAAAATGGACAAGATCTTTATGTGAGAGTGGCGGCTTCAGAACTTGGCTCGTCCAAGAAGAAGCTTTTGGTTGCAATATGTGTGTCTGTGGCTTCATTTTTAGGCTTCTTGGCCTTTGTCATTTGCTTGATCCTTGGGCGTAGAAGGAAAGTTAAAGGTAATGTGATCTCTCCTGATATCACTGAAGGTCATATTCAATCTCAAGAAAATGAAGTGGAAATGCCAATCTTTGATTTTACAACGATCGAGATTGCGACGAATGGTTTCTCTTTTTCGAACAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTCCTTGTGGACAAGAGATTGCAGTAAAGAGACTGGCTGAGGGCTCTGGCCAAGGGCAAAGTGAGTTCAAAAATGAGGTTTTGTTGATCTCACAACTTCAGCATCGAAATCTTGTCAAGCTTCTTGGTTTCTGCATTCACCAACAAGAAACATTGCTGATCTATGAATATATGCAAAACAAAAGTTTAGACTATTTCCTATTCGATAATAAGAGGCGATCTTTACTGAATTGGCAAAAGAGATTGGACATCATAATTGGGATAGCTCGAGGACTTCTTTATCTTCATAGAGATTCAAGACTGAGAATAATACATAGGGACCTCAAAGTAAGTAATATATTACTAGACAATGAAATGACTCCAAAAATTTCAGACTTTGGTATGGCACGCATGTTTGGGGAAGATCAAAATATGACCAAAACCAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCAGAATATGCACTCGACGGATGTTTTTCATTGAAATCAGATGTGTTTAGCTTCGGGGTAATTCTTTTGGAAATAGTTAGCGGTAAGAAGAACAGAGGCTTCTTCCATACCAATCATCAACTAAATCTTCTCGGACATGCATGGAAGCTTTGGGATGAAGAAAATGCTTTGGAGTTAATGGATGCAGCTTTGGAGGATGAATTCCAACCTTCTCAAGCCCTGCGATGCATTGAAGTGGGGCTTTTGTGTGTTCAACAGAACCCTGATGAAAGGCCGACTATGTGGTCAGTACTTTCAATGTTGGAGAGTGAAAATGTATTGTTGTCTCATCCTAAACAACCTGGATTTTACATGGAAAGAATGTTTTCTAAGAATTTATCGGCCGAAACCTCCACTTCCAATGAAGTGACGGTTACATCGCTACACGGTCGTTAG 2445 41.68 MGERICRCKLSTLLIFWTTIALFPRKSLAIDSIKAGESIIGSTQILVSTAQNFVLGIFNPQGSKFQYLGIWFNNIPQTVVWVANRDNPLVTSSGKLTVNGEGNIILLNETGGVLWSSPSPGSMKQPVAQLLNTGNLVLGESGSENYLWQSFDYPSDTLLPGMKLGWDSKTGLNRKLTSWKSSNDPSSGAFTYSIETDGLPQFVIREGPTITFRGGPWYGNRFSGSGALRDTAIYSPKFDYNATEAFFSYDAADNLSVRLVLNAAGFFQQFYWVDDGKYWNPLYIMPGDRCDVYGLCGDFGVCTFSLTAECDCMAGFEPKSPNDWERYRWSDGCVRRDHRTCGNGEGFKRISSVKLPDSSGNLVNVNTSIVDCEAACLNNCSCLAYGIMELPTGGYGCVTWFHKLVDVKFVLENGQDLYVRVAASELGSSKKKLLVAICVSVASFLGFLAFVICLILGRRRKVKGNVISPDITEGHIQSQENEVEMPIFDFTTIEIATNGFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQQETLLIYEYMQNKSLDYFLFDNKRRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMTPKISDFGMARMFGEDQNMTKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTNHQLNLLGHAWKLWDEENALELMDAALEDEFQPSQALRCIEVGLLCVQQNPDERPTMWSVLSMLESENVLLSHPKQPGFYMERMFSKNLSAETSTSNEVTVTSLHGR 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5551384 5554568 - ClG42_03g0053300.10 Clacu03g0533 245098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0533 814 ProSiteProfiles Protein kinase domain profile. 500 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0533 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 34 786 - -
Clacu03g0533 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 779 - -
Clacu03g0533 814 SMART blect_4 37 154 IPR001480 -
Clacu03g0533 814 Pfam PAN-like domain 341 407 IPR003609 -
Clacu03g0533 814 Pfam Protein tyrosine and serine/threonine kinase 501 770 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0533 814 Pfam Domain of unknown function (DUF3403) 773 814 IPR021820 GO:0004674(InterPro)
Clacu03g0533 814 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Clacu03g0533 814 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544(InterPro)
Clacu03g0533 814 PIRSF SRK 3 814 IPR024171 GO:0004674(InterPro)
Clacu03g0533 814 CDD STKc_IRAK 506 772 - -
Clacu03g0533 814 SMART serkin_6 500 771 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0533 814 Pfam D-mannose binding lectin 78 180 IPR001480 -
Clacu03g0533 814 SUPERFAMILY Protein kinase-like (PK-like) 483 792 IPR011009 -
Clacu03g0533 814 Gene3D - 27 151 IPR036426 -
Clacu03g0533 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 575 - -
Clacu03g0533 814 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Clacu03g0533 814 CDD PAN_AP_plant 338 422 - -
Clacu03g0533 814 Gene3D Transferase(Phosphotransferase) domain 1 576 782 - -
Clacu03g0533 814 SMART ntp_6 342 421 IPR003609 -
Clacu03g0533 814 CDD B_lectin 39 154 IPR001480 -
Clacu03g0533 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 185 IPR036426 -
Clacu03g0533 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0533 814 Gene3D Phosphorylase Kinase; domain 1 466 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0155 Clacu-Chr2:1544760 Clacu03g0533 Clacu-Chr3:5551384 1.10E-164 dispersed
Clacu03g0533 Clacu-Chr3:5551384 Clacu03g0535 Clacu-Chr3:5565782 0.00E+00 dispersed
Clacu03g0532 Clacu-Chr3:5538798 Clacu03g0533 Clacu-Chr3:5551384 1.30E-187 tandem
Clacu03g0533 Clacu-Chr3:5551384 Clacu03g0534 Clacu-Chr3:5558830 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73417 PF07714 PK_Tyr_Ser-Thr 1.70E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0533 - - - 0.0