Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0534 ATGGGAAAACTGATTTGGAGATACAAGGTTTCCATTTTTCTGTTTTTCTGGACGACCATTGCTCTGTTTCCCAGAAAATCATTTGCAATTGATAGCATAAAAGCAGGGGAATCTATCAATGGCAGTACCCAGATACTAGTTTCAGCTCAACAGAACTTTGTGCTGGGAATGTTCAATCCTAAAGACACCAAATTTCATTACTTGGGAATATGGTACAAGAACATACCACAAACTGTTGTGTGGGTAGCAAACAGAGACAAGCCACTTGTAAATTCCTCTGCTAGATTAACATTCAATGGAGGAAACCTCGTTCTTCTGAATGAAGGAGATGGAATTCTATGGTCTTCTACTACTTCAAAATTGGTGAAAGAACCAATCGCTCAACTACTAGATAATGGTAATTTGGTTTTAAGAGAATATGGGTCTGAAAATTATTTGTGGGAGAGTTTCAACTATCCTTCTGATACTCTGTTACCGGGTATGAAACTTGGTTGGGACTCGGAAACCGGTCTGAACCGGAAGTTGACGGCATGGAAAAGCTCAAACGATCCGTCGCCTGGGAATTTCATTTATGGAATGGACCAGGGTGGGCTTCCCCAGTTTGAAACTCGCAATGGATCCGTCACAATGTACAGGGGTGGCCCATGGTTCGGTAGTAGGTTTAGTGGAACTTCCCCTTTTAGAGAAACGGCAATTCATTATCCACGGTTCAATTATAGCGCGAACGAAGCATTCTTTTCGTTCGAGTCTGCGAAAAATCTCACTGGAAGATATGCGCTTGACACAGAAGGGTACTTCGGACAATCTTATTGGATAGATGATGGAAATGATTGGTACTCTTTGTATAAATTACCAGGAGACGATTGCGATAAGTACGGACACTGCGGAAATTTTGGTATTTGTACATATTCCGTCATACCTCTCTGCGATTGCATCCATGGGTTTCAACCAAAATCGCCAGATGATTGGGAAAAGCATAGCTGGTCAGGTGGGTGCGTTAGAAGGGACAATCAAACCTGCAAAAATGGAGAAGGGTTTAAAAGAATCAGCAGTGTGAAATTGCCAGATTCGTCAGGGAAGTTGGTGAATGTTAATACGAGCATTCATGACTGCGAAGCTGCGTGCTTGAGTAATTGCTCTTGCTTGGCTTATGCAATAATGGAGCTTTCCACAGGCGGCTATGGCTGCATCATGTGGTTTCAGAAATTGGTGGATATTAGAATCCTTCCTGATAATGGGCAGGATATATATGTGAGATTGGCGGCTTCAGAATTAGATTCGGCTAACAGGAAACTTATAGTTGTGCTGAGTGTGTGTATTGCTTCTCTGATAAGCTGCCTGGTTGTAGTTGCTTGCCTTATCTATTGGCGTAGAAGGAGGGTTGAGGGTAATGAGGTTTGGTCTCAAGAGAACGAAGTTGAGATGCCACTCTATGATTTTACCATGATCATAACTGCCACAAATAATTTTTCTTCCTCAAATAAGATTGGCGAAGGTGGTTTCGGTCCCGTATACAAAGGCGTGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGACTGGCAGAGGGTTCAAGCCAAGGGCAAGACGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTCCAACATCGAAATCTTGTCAAGCTGCTTGGTTTTTGCATTCATCAACACGAAACGTTGCTGGTCTATGAATATATGCCAAACAAAAGTCTAGACTACTTTCTCTTCGATAACAAGAAGAGATCTTTACTCAATTGGAAAAAGAGACGGGACATCATAATCGGAATAGCTCGAGGTCTTCTTTATCTTCATAGAGATTCAAGGCTTATAATTATACATAGGGATCTCAAAGTGAGTAATATCTTACTTGATAACGAAATGAATCCAAAAATTTCAGACTTCGGTATGGTGCGTATGTTCACTAAAGACCAAACTATGACACACACCAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCAGAGTATGTAATCGACGGATATTTTTCAATGAAATCTGATATCTTCAGTTTTGGAGTCATTCTTTTAGAAATAGTTAGTGGTAAGAAGAATAGAGGCTTCTTCCATCCCAACCATCAACTAAATCTTCTTGGACATGCATGGAAACTTTGGGATGAAGGAAATGCGTTGGAATTAATGGATGAAACATTGAAGGATCAATTCCAAAACTCTGAAGCCCTGCGATGCATTCAAGTTGGCCTTTTGTGTGTTCAAGAGAATCCTGAAGAAAGGCCAGCTATGTGGTCTCCGACCGGCCAAGTGGCGATGAACTGCAGGGCTATTAAGGGCGATGGTCCATTTTTCTTATCATGCTCCAAATTTCAGTACTTGGGAATATGGTACAAGAACATCCCACAGACTGTTGTGTGGGTAGCAAATAGAGACAACCCACTTGTAAATTCCTCTGCCAGATTAACATTCAAGGCAGGAAACCTCCTTCTTCAGAATGAAAGCAATGGAATTCTATGGTCTTCCACTTCTTCAGAATTTGATAAAGAACCAGTGGCTCAACTACTAGATAGCGGTAATTTGGTTATAAGAGAATCTGAGTCTGAAAATTATTTGTGGGAGAGTTTCAATTATCCCTTTGATACTCTGTTACCGGGCATGAAACTCGGTTGGGACTGTTTTCAAGTCCCAACCGGAAGTTGA 2673 41.34 MGKLIWRYKVSIFLFFWTTIALFPRKSFAIDSIKAGESINGSTQILVSAQQNFVLGMFNPKDTKFHYLGIWYKNIPQTVVWVANRDKPLVNSSARLTFNGGNLVLLNEGDGILWSSTTSKLVKEPIAQLLDNGNLVLREYGSENYLWESFNYPSDTLLPGMKLGWDSETGLNRKLTAWKSSNDPSPGNFIYGMDQGGLPQFETRNGSVTMYRGGPWFGSRFSGTSPFRETAIHYPRFNYSANEAFFSFESAKNLTGRYALDTEGYFGQSYWIDDGNDWYSLYKLPGDDCDKYGHCGNFGICTYSVIPLCDCIHGFQPKSPDDWEKHSWSGGCVRRDNQTCKNGEGFKRISSVKLPDSSGKLVNVNTSIHDCEAACLSNCSCLAYAIMELSTGGYGCIMWFQKLVDIRILPDNGQDIYVRLAASELDSANRKLIVVLSVCIASLISCLVVVACLIYWRRRRVEGNEVWSQENEVEMPLYDFTMIITATNNFSSSNKIGEGGFGPVYKGVLPCGQEIAVKRLAEGSSQGQDELRNEVLLISKLQHRNLVKLLGFCIHQHETLLVYEYMPNKSLDYFLFDNKKRSLLNWKKRRDIIIGIARGLLYLHRDSRLIIIHRDLKVSNILLDNEMNPKISDFGMVRMFTKDQTMTHTKRVVGTYGYMSPEYVIDGYFSMKSDIFSFGVILLEIVSGKKNRGFFHPNHQLNLLGHAWKLWDEGNALELMDETLKDQFQNSEALRCIQVGLLCVQENPEERPAMWSPTGQVAMNCRAIKGDGPFFLSCSKFQYLGIWYKNIPQTVVWVANRDNPLVNSSARLTFKAGNLLLQNESNGILWSSTSSEFDKEPVAQLLDSGNLVIRESESENYLWESFNYPFDTLLPGMKLGWDCFQVPTGS 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5558830 5563152 - ClG42_03g0053400.10 Clacu03g0534 245099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0534 890 CDD B_lectin 39 153 IPR001480 -
Clacu03g0534 890 SMART ntp_6 341 420 IPR003609 -
Clacu03g0534 890 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544(InterPro)
Clacu03g0534 890 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Clacu03g0534 890 CDD STKc_IRAK 496 754 - -
Clacu03g0534 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0534 890 SUPERFAMILY alpha-D-mannose-specific plant lectins 795 884 IPR036426 -
Clacu03g0534 890 Gene3D Transferase(Phosphotransferase) domain 1 566 768 - -
Clacu03g0534 890 CDD B_lectin 772 869 IPR001480 -
Clacu03g0534 890 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 456 565 - -
Clacu03g0534 890 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Clacu03g0534 890 FunFam Os04g0303100 protein 72 210 - -
Clacu03g0534 890 Gene3D - 769 883 - -
Clacu03g0534 890 PIRSF SRK 772 888 IPR024171 GO:0004674(InterPro)
Clacu03g0534 890 PIRSF SRK 3 761 IPR024171 GO:0004674(InterPro)
Clacu03g0534 890 SUPERFAMILY Protein kinase-like (PK-like) 469 755 IPR011009 -
Clacu03g0534 890 SMART serkin_6 490 763 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0534 890 SMART blect_4 37 153 IPR001480 -
Clacu03g0534 890 SMART blect_4 753 869 IPR001480 -
Clacu03g0534 890 Pfam D-mannose binding lectin 78 179 IPR001480 -
Clacu03g0534 890 Pfam D-mannose binding lectin 794 882 IPR001480 -
Clacu03g0534 890 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Clacu03g0534 890 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 765 - -
Clacu03g0534 890 CDD PAN_AP_plant 337 421 - -
Clacu03g0534 890 Pfam PAN-like domain 340 406 IPR003609 -
Clacu03g0534 890 Gene3D Phosphorylase Kinase; domain 1 454 565 - -
Clacu03g0534 890 ProSiteProfiles Protein kinase domain profile. 490 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0534 890 Gene3D - 27 151 IPR036426 -
Clacu03g0534 890 Pfam Protein tyrosine and serine/threonine kinase 493 754 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0534 890 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 756 - -
Clacu03g0534 890 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 184 IPR036426 -
Clacu03g0534 890 ProSiteProfiles Bulb-type lectin domain profile. 751 866 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0534 Clacu-Chr3:5558830 Clacu03g0536 Clacu-Chr3:5573850 6.50E-233 dispersed
Clacu03g0533 Clacu-Chr3:5551384 Clacu03g0534 Clacu-Chr3:5558830 0.00E+00 tandem
Clacu03g0534 Clacu-Chr3:5558830 Clacu03g0535 Clacu-Chr3:5565782 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73418 PF07714 PK_Tyr_Ser-Thr 5.20E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0534 - - - 0.0