Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0535 ATGGGAGAACTGATTTACAGGTGCAAGCTTTCGGCTTTTCTCTTTGTCTTAACGACCATAGCTCTGTTTCCAACAAAATCATACGGAAATGACAGCATAAAAACAGGGGAATCCATCAATGGAAGTACCCAGATTTTAATTTCATCTGGAGGAAACTTCGTGTTGGGAATTTTCACTCCCCAAGGCTCAAAATTTCAGTATTTGGGAATATGGTTCAACAACATCCCACAAACTATCGTGTGGGTCGCAAACAGAGACAACCCACTTGTAAATTCCTCTGGAAAATTAGAATTCAGAAGAGGAAACATCGTTCTTCTCAACGAAACAGATGGAATTTTATGGTCTTCCACTTCTCCACGATCATCGAAAGAAACAGTAGCTCAGCTGCTAGATACAGGTAATTGGGTCTTAAGAGAATCTGGGTCTGAAGATTATCTATGGCAGAGTTTCGATTACCCCTCCGATACTCTGTTACCTGGGATGAAACTGGGTTGGAACTCCAAAACCGGTCTAAACCGGAAGTTAAGATCGTGGAAAAGCTCAAACGATCCGTCGTTTGGGGACTTCACTTACAGTGTGGATCTTAGTGGGCTTCCCCAATTGGTAACTCGCAAAGGACCCATCCTAAAGTACCGGGGCGGCCCATGGTACGGTAATAGGTTTAGCGGTAGCGCTCCTCTCAGAGATACCGCAGTTTATTCTCCGAAGTTCGAGTATACAGCCGACGAAGTAACTTATTCAATCGTTGCGACGAGTAGTCTCATTGTAAAACTTGCACTGGACGCGGCTGGAATATTGCATCAAGTGTATTGGGACGATGGTAGAAAAGATTGGTATCCTCTGTATACATTGCCAGGGGATCGCTGCGACGACTATGGACTTTGCGGGAATTTTGGTATTTGTACCTTTTCCCTCACTCCACAATGCAATTGCATGGTTGGGTTTGAACCCAAATCGCCTGATGATTGGAAAAGGTTTAGATGGTCAGATGGCTGCGTTAGAAAGGACAATCAAACCTGTAGGAATGGAGAAGGGTTTAAAAGAATCCGCAGTGTGAAATTGCCAGATTCTTCAGGGTATTTGGTGAATATTAATACAAGCATTCATGACTGCGAGGCGGCGTGCTTGAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAACTTTCTACAGGTGGCTATGGCTGTGTCACTTGGTTTCAGAAATTGATTGATGCTAGATTTGTTCCTGAAAATGGACAGGATATCTATGTGAGAGTGGCGGCATCTGAATTAGACTCGAGCAACAGGAAGCTTGTAATTGCTGTTAGTGTGTCTGTGGCTTCACTGATAGCCTTCTTGGTTTTAGTGGTTTGTTTCATCCTGTGGCGTAGAAGGAAAGTTAGAGGCGAAATTCAAAGTCCAGAGAATGAAGTTGAGATGCCACTCTATGATTTTACTACGATTGAGATTGCCACAAATAATTTTTCTTTTTCCAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTCCATGTGGGCAAGAAATTGCAGTAAAAAGGTTGGCAGAGGGCTCTGGTCAAGGACAAATCGAGTTCAAAAATGAGGTTTTATTGATTTCCCAACTTCAACATCGAAATCTTGTCAAGCTGCTTGGTTTCTGCATTCATCAAGAACAAACATTACTAGTTTATGAATACATGCCAAACAAAAGTCTAGACTACTTTCTCTTTGATGATGAGGGGCGATCTTTACTCAATTGGCAAAAGAGATTGGACATCATAATTGGAATAGCTCGAGGGCTTCTTTATCTTCACAGAGATTCTAGGCTTAGAATCATACATCGGGATCTTAAAGTGAGTAATATATTATTGGATAATGAAATGAATCCAAAAATTTCAGACTTTGGAATGGCACGAATGTTTCCCGAGGACCAAACTATGACAAAAACCCAAAGAGTTGTTGGGACCTTTGGCTATATGTCTCCTGAATATGCACTCGACGGATGTTTTTCATTGAAATCAGACGTTTTTAGCTTTGGAGTTATTCTTTTGGAAATAGTAAGTGGTAAGAAGAACAGAGGCTTCTTCCATACGGATCATCAACTTAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAAGGAAATGCTTTGGAATTAGTGGATGAAACATTGGAGGATCAATTCCAACCTCACGAAGCACTGCAATGCATTCAAGTTGGGCTTTTGTGTGTTCAACAGAATCCAGACGAAAGACCAACTATGTGGTCAGTACTTTCAATGTTAGAGAGTGAAAATATGTTATTATCTCCTCCTCAACAACCTGGATTTTACACCGAACGAATGGTTTCGAAGATGGATAAATCGTCGACTGAGATCTCGTCTTCCAGTGAAGTGACCGTTACACTACTACAAGCTCGTTAG 2418 41.73 MGELIYRCKLSAFLFVLTTIALFPTKSYGNDSIKTGESINGSTQILISSGGNFVLGIFTPQGSKFQYLGIWFNNIPQTIVWVANRDNPLVNSSGKLEFRRGNIVLLNETDGILWSSTSPRSSKETVAQLLDTGNWVLRESGSEDYLWQSFDYPSDTLLPGMKLGWNSKTGLNRKLRSWKSSNDPSFGDFTYSVDLSGLPQLVTRKGPILKYRGGPWYGNRFSGSAPLRDTAVYSPKFEYTADEVTYSIVATSSLIVKLALDAAGILHQVYWDDGRKDWYPLYTLPGDRCDDYGLCGNFGICTFSLTPQCNCMVGFEPKSPDDWKRFRWSDGCVRKDNQTCRNGEGFKRIRSVKLPDSSGYLVNINTSIHDCEAACLNNCSCLAYGIMELSTGGYGCVTWFQKLIDARFVPENGQDIYVRVAASELDSSNRKLVIAVSVSVASLIAFLVLVVCFILWRRRKVRGEIQSPENEVEMPLYDFTTIEIATNNFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQIEFKNEVLLISQLQHRNLVKLLGFCIHQEQTLLVYEYMPNKSLDYFLFDDEGRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFPEDQTMTKTQRVVGTFGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEGNALELVDETLEDQFQPHEALQCIQVGLLCVQQNPDERPTMWSVLSMLESENMLLSPPQQPGFYTERMVSKMDKSSTEISSSSEVTVTLLQAR 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5565782 5568892 - ClG42_03g0053500.10 Clacu03g0535 245100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0535 805 CDD B_lectin 39 153 IPR001480 -
Clacu03g0535 805 SMART serkin_6 489 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0535 805 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Clacu03g0535 805 SMART ntp_6 341 420 IPR003609 -
Clacu03g0535 805 Pfam PAN-like domain 340 405 IPR003609 -
Clacu03g0535 805 Pfam D-mannose binding lectin 78 179 IPR001480 -
Clacu03g0535 805 SMART blect_4 37 153 IPR001480 -
Clacu03g0535 805 Pfam Protein tyrosine and serine/threonine kinase 490 759 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0535 805 ProSiteProfiles Protein kinase domain profile. 489 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0535 805 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Clacu03g0535 805 Gene3D Phosphorylase Kinase; domain 1 455 564 - -
Clacu03g0535 805 Gene3D Transferase(Phosphotransferase) domain 1 565 768 - -
Clacu03g0535 805 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 774 - -
Clacu03g0535 805 SUPERFAMILY Protein kinase-like (PK-like) 472 788 IPR011009 -
Clacu03g0535 805 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544(InterPro)
Clacu03g0535 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 565 768 - -
Clacu03g0535 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 184 IPR036426 -
Clacu03g0535 805 CDD PAN_AP_plant 337 421 - -
Clacu03g0535 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 456 564 - -
Clacu03g0535 805 PIRSF SRK 3 805 IPR024171 GO:0004674(InterPro)
Clacu03g0535 805 Gene3D - 26 150 IPR036426 -
Clacu03g0535 805 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Clacu03g0535 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0535 805 CDD STKc_IRAK 495 761 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0531 Clacu-Chr3:5525118 Clacu03g0535 Clacu-Chr3:5565782 9.10E-192 dispersed
Clacu03g0532 Clacu-Chr3:5538798 Clacu03g0535 Clacu-Chr3:5565782 1.10E-192 dispersed
Clacu03g0533 Clacu-Chr3:5551384 Clacu03g0535 Clacu-Chr3:5565782 0.00E+00 dispersed
Clacu03g0535 Clacu-Chr3:5565782 Clacu05g1668 Clacu-Chr5:25126069 3.00E-213 dispersed
Clacu03g0534 Clacu-Chr3:5558830 Clacu03g0535 Clacu-Chr3:5565782 0.00E+00 tandem
Clacu03g0535 Clacu-Chr3:5565782 Clacu03g0536 Clacu-Chr3:5573850 2.10E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73419 PF07714 PK_Tyr_Ser-Thr 3.30E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0535 - - - 0.0